Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq89 118 3e-21 >seq89 Length=200026 Score = 118 bits (130), Expect = 3e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || |||| || || || |||| || ||| ||||||||||| ||||| | Sbjct 23145 TCCACCACGAAGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGA 23204 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || || || | || ||||| |||||||| || || || || | || Sbjct 23205 CAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGG 23264 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||| || ||||| || || || | || ||||| || || | ||| ||||| || Sbjct 23265 AATTCCCTCCTTATCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGATTCGAC 23324 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| ||||| ||||| || || || ||||| || || |||||||| Sbjct 23325 TTCGAGTGTGATAGTCTTTCCCGTAAGGGTCTTCACAAAGATCTGCAT 23372 Score = 114 bits (126), Expect = 3e-20 Identities = 158/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | |||||||| | ||| || || || || || ||||||| Sbjct 23374 CCACCACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 23433 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||||| |||||| || || ||| Sbjct 23434 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGG---TCCGGG 23490 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||||||||| || | || || || || |||| ||||| || || Sbjct 23491 GGAATACCCTCCTTATCCTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCA 23550 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || ||||| ||||| ||||| || || || |||||||||| Sbjct 23551 ACCTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACGA 23590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650062189586