Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 2e-15 seq117 87.8 4e-12 >seq4 Length=852194 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 333775 GTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAA 333834 ||||||| ||| |||| ||||| || | || ||||| ||||||||||| || | Sbjct 354523 GTTCGTAGTGGTAAATATCTGTGCATACCTCATCAAGGAATCCGGAGTCGTGGCTGACGA 354464 Query 333835 TCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACA 333894 ||| | | | || || | || |||||||||| | ||| |||| || | | Sbjct 354463 TCAAACTAGTGATCTCGGTATGTTTTTTCAGGTATTCTTGTAACCATTTCACATTTGCAA 354404 Query 333895 CAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCAC 333954 || |||||||||||||| ||||| ||||| || | | || |||| |||||| |||| Sbjct 354403 CATCGAGATGGTTGGTCGGTTCGTCCAGAAGAAGCACGTCGGCCTTCATGAGCATAGCAC 354344 Query 333955 GTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 | ||||| || || ||||| ||||| || || || || Sbjct 354343 GAGCAAGGGCAAGCTTCATCTTCCAACCACCGGACAG 354307 >seq117 Length=965375 Score = 87.8 bits (96), Expect = 4e-12 Identities = 175/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA--TGCC 243559 |||||||| ||||| || | || || ||||||||| | || || | ||| |||| Sbjct 188145 ATCATCACTGAAGCTGTCGCAATTGAGAAGGAATTCCTAACGGATGCCCTCCCAGTTGCC 188086 Query 243560 GGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCA 243619 ||| | |||||||| || | || ||| | ||||| ||||| || || || || | Sbjct 188085 --CTTCTCGGCATGAATTCCAATCTTATGTGCCAGTATATCGAGTTTGTTGCTGATAGAC 188028 Query 243620 TTTTCATCGCGCTTGGTTATGAGAAAGTG-TACAACTCCAAGAACCCCTTTGCCTTTATG 243678 | | | |||||||| | || |||| |||||||||| ||||| || | ||| ||| Sbjct 188027 TCCTGGTTGCGCTTGGCAAC-AGCAAGTACTACAACTCCACCAACCCATTCGACTTCATG 187969 Query 243679 GAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || ||| || || || ||||| ||||||||||| ||||| || | || || || Sbjct 187968 GACAACATCTCCCTGGCTGGTAAAACCAACTTCTTCGAGAAGCGCGTTGGCGACTACCAG 187909 Query 243739 CGCCCTGGTGTGATG 243753 ||||||| ||| Sbjct 187908 AAGGCTGGTGTCATG 187894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102875944503450