Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq117 102 1e-16 seq219 100 3e-16 seq221 86.0 7e-12 >seq117 Length=965375 Score = 102 bits (112), Expect = 1e-16 Identities = 302/460 (66%), Gaps = 22/460 (5%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| ||||| ||||||||||||||||| || || || ||| | ||| || ||||| Sbjct 187912 GTAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTTTTACCAGCCAGGGAGATGTTGTCCAT 187971 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTG--GC--ACCCCAATCTGTTTGAG 125871 || || |||||||| | ||||| | | ||| || || | | ||| | || Sbjct 187972 GAAGTCGAATGGGTTGGTGGAGTTGTAGTACTTGCTGTTGCCAAGCGCAACC------AG 188025 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||| | ||| | || |||| || |||| |||| | || ||||| |||| || Sbjct 188026 GAGTCTATCAGCAACAAACTCGATATACTGGCACATAAGATTGGAATTCATGCCGAGAAG 188085 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | | |||||| || ||| | ||| ||||||||||| | || ||||| | ||| Sbjct 188086 GGCAACTGGGAGGGCATCCGTTAGGAATTCCTTCTCAATTGCGACAGCTTCAGTGATGAT 188145 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCAA 126050 | | || | | | | || | ||| | | ||| ||| | || ||||| Sbjct 188146 GTCCTGCACAACCTGCTTGCTGGGGCGGTTGTTGAGA----TGA-GAGAACAACAGGCAA 188200 Query 126051 AC----TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 | || ||| ||||| || || || || || || || || ||||| || || Sbjct 188201 GCGAAGTCCGTGTGAAGACCTTCATCGCGAGAAATCAGCTCGTTGGAGAAAGTAAGACCA 188260 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | || ||||||||||||||||| || | ||| || || ||||||||||| Sbjct 188261 GGCATCAAGCCACGCTTCTTCAACCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGATG 188320 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 || || ||| ||||| || | ||||||| ||| |||| Sbjct 188321 CCTTCAACAGCGGCGAAGGCGACAAGACGCTGAGCGAAGG 188360 >seq219 Length=270999 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 ||||| |||||| || |||||||| ||||| | | || | || || ||||||| || Sbjct 154203 ACTTTTCGTAGAGAGCGTCAAACTCGTCACCATAGACATCAGCCAGGCCAGGTGCCTCAT 154144 Query 114759 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGA 114818 |||||||| || | ||| | ||| ||||||| |||||||| || || |||||| Sbjct 154143 TCGGGCAGAAAAGTGTCCAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGG 154084 Query 114819 TCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 114878 |||| ||||| |||| || || ||| | | || || | || || || || | Sbjct 154083 TCCAAAGAGCGTAGAAAAGGTCACGAGCTCTGACCTCCTCCTTTCCATGGTTTTTGCGGA 154024 Query 114879 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 114921 ||||| || || | | ||| |||||||| ||||||||||| Sbjct 154023 GATCCAAGAATTCGAAAACATCAGCGTGCCAAGGTTCCAGGTA 153981 >seq221 Length=103995 Score = 86.0 bits (94), Expect = 7e-12 Identities = 224/340 (66%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 172618 GAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATA 172677 ||||||||||||||| ||||||| |||| ||| ||||||||||| | ||||||| Sbjct 59492 GAGACCCTTAATGTGACTTCCATCGTGATCCTGATCGGTCATAATCATCAAGTGACCATA 59433 Query 172678 GCGAAGCTCGGAAACATCTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAG 172737 || || || ||| ||| ||||| ||||||||||| | | ||||||| Sbjct 59432 TCGGAGGCCGCGCGTATCGGTATATTCCTTCTTATGTTGAAGACCAAGAAAGTTCTTGAT 59373 Query 172738 ATCATTGAACTCTTGGTTT---GATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTT 172794 || | || |||||| ||| ||| | |||| | || ||||| |||||||| Sbjct 59372 ATTCTGGATCTCTTGATTTTGCGATATCTGTTG---AAACGAGGCATCACGGACATTGAG 59316 Query 172795 ACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGC 172854 | ||| || || || ||||| ||||| | |||| | || || || | | || || Sbjct 59315 AAGCTTTCCTCGCAGGGGGAAGACACCAAACAGATCCGGTCCGACAACTGCTCGTCCTGC 59256 Query 172855 AACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACT----TTCCAG 172910 | || | | || || |||||||| || || | || || || || | | || Sbjct 59255 CATGGCCAAGCCTTTAGCTGAATCACCTTCGGTAAGAATCAGTGTGCAGTGATGTCCCTC 59196 Query 172911 ATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGG 172950 ||| || || |||||||| |||||| || |||||| Sbjct 59195 CTTG----GTTCCTGCCTTGTTTGCATCGGTCAGCTTGGG 59160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351456993960