Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq89 96.9 3e-15 seq238 84.2 2e-11 >seq89 Length=200026 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | || || | || | || ||||| || || || ||||| || | Sbjct 23666 ACCGCCACGCAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGA 23725 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || |||| || ||||||||||| ||| | || | |||||||| |||||||| Sbjct 23726 GAGGGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGG 23785 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || ||| ||| || || | || || || || || Sbjct 23786 AATGCCTTCCTTGTCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAAC 23845 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCA 64421 || | ||| | ||||||||| |||| Sbjct 23846 CTCCAGAGTGATGGTCTTGCCAGTCA 23871 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 ||||| || |||||||| || | | || || | || ||||||||||| || || || Sbjct 22954 TCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCCTCAAGCTGCTTTCCCGCGAAA 23013 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| |||||||| || |||||||||||||| || || || || ||| ||| || Sbjct 23014 ATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGTCTTCACGTTA 23073 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| | || || || | || | |||||| || || | || || ||| Sbjct 23074 TCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTCTTTCCCGTAAGGGTCTTCACG 23133 Query 64433 AAAATTTGCATT 64444 || || |||||| Sbjct 23134 AAGATCTGCATT 23145 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || || || ||||||||||| || | | |||||| |||| ||| Sbjct 23392 ACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 23451 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 |||||||| || || | || | ||||||||||| || ||||| || || || || || Sbjct 23452 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGG 23511 Query 64355 ATTTTTTGCTTTACA 64369 || ||| ||| ||| Sbjct 23512 ATCTTTGTCTTGACA 23526 >seq238 Length=427615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || || | || || || || || |||||||| || | Sbjct 50105 ACCACCACGCAGACGGAGCACGAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 50046 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || ||||||||||| || | || || ||||||||||||||||| Sbjct 50045 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGAGG 49986 Query 64336 AATTCCTTCTTTTTCT 64351 || || || || ||| Sbjct 49985 GATGCCCTCCTTGTCT 49970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643007524280