Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq219 178 1e-39 >seq219 Length=270999 Score = 178 bits (196), Expect = 1e-39 Identities = 434/651 (67%), Gaps = 20/651 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| ||| ||| | ||||| ||||| ||| || ||||| || ||| |||| Sbjct 153507 AACTACAATTTCTTCGGTTTCAAGACTCTTGAGCGTTCATACCTGCTACGGATCAATGGG 153566 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| | ||||| || || || |||||||||| || || | || || |||||| || Sbjct 153567 AAGGTGGCAGAGCGTCCCCAGCACATGCTGATGCGGGTTGCTGTTGGAATACACGGCAAC 153626 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATG-CGGGACA----AGAGGTA---TA 93886 || || ||| | || | || ||| | || | || ||| ||| || Sbjct 153627 GATATT--GAAAG------GGCCATTGAGACATATAACTTGATGTCTCAGAAGTACTTTA 153678 Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTT 93946 || ||| | ||||| |||||||| || || || || | | ||| || | || |||| Sbjct 153679 CCCATGCCTCGCCGACTCTGTTCAATGCCGGCACTCCCCAGGCTCAGCTGGCCTCATGTT 153738 Query 93947 TCCTGATGACGA-ACAAG-GCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTG 94004 ||||| | ||| | || || || |||| || || | || | | | ||| ||| Sbjct 153739 TCCTGGT--CGATATGAGAGCAGATAGCATCGAAGGTATCTATGATACCTTGAAGACCTG 153796 Query 94005 TGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAG 94064 |||| || || || || || || || || ||| |||||| | ||||||| Sbjct 153797 CGCGATGATTTCCAAGACTGCAGGCGGTATTGGTCTCAACGTCCACCGAATCCGTGCCAC 153856 Query 94065 GGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGT 94124 ||| || ||||| ||| ||||| ||| | || || || |||||||||||||||| || Sbjct 153857 GGGCTCTTACATTGCCGGAACCAACGGCTCTTCTAATGGAATCGTCCCTATGCTCCGTGT 153916 Query 94125 CTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGC 94184 |||||||| | ||| | |||||||| |||||||| | | || |||| |||| || Sbjct 153917 ATTCAACAATACTGCGAGATACGTGGATCAGGGTGGAAACAAGCGGCCGGGTGCTTTTGC 153976 Query 94185 GGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCA 94244 |||| || || || |||||||| || || | ||| | || || || || ||||| Sbjct 153977 TATCTACCTGGAACCTTGGCACGCTGATGTTTTCGAATTCTTGGATCTCCGCAAAAACCA 154036 Query 94245 CGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTT 94304 || || || || || || | ||||| ||||||||||| ||| ||||| || || Sbjct 154037 TGGAAAGGAGGAGGTCAGAGCTCGTGACCTTTTCTACGCTCTTTGGACCCCAGATCTGTT 154096 Query 94305 TATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGA 94355 |||||| || || ||| ||| | ||||| ||||| || || ||||| Sbjct 154097 TATGAAGCGGGTTGAGGCTAACGGTGACTGGACACTTTTCTGCCCGAATGA 154147 Score = 96.9 bits (106), Expect = 3e-15 Identities = 192/279 (69%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 95096 TGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGT 95155 |||| |||||||| ||||| ||||| ||| ||||| |||||| ||| |||| | Sbjct 154931 TGCTGGTGGCCCCTATGCCGACGGCAAGCACCAGCCAGATTCTTGGCTTCAATGAGTGCT 154990 Query 95156 TCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCA 95215 |||| || | ||| || ||| | ||| | || || || || || ||||||| || Sbjct 154991 TCGAGCCGTACACTTCGAACATTTACTCTCGCCGAGTCCTTGCTGGAGAATTCCAAGTTG 155050 Query 95216 TCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAG 95274 ||||| || || |||||| | || || ||||| | ||| |||||| | ||| Sbjct 155051 TCAACCCATGGCTTCTTAAGGACCTTGTCGACT-TGGGTCTCTGGTCTGACAACATGAAG 155109 Query 95275 AACCA-ACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACAT 95333 |||| | | | || | || || || |||||||| || | || || | | ||| Sbjct 155110 AACCGCATTATTGCG-GAGGGTGGTTCTGTTCAGAACATTCCCAATATTCCCGCAGCCAT 155168 Query 95334 CAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 |||||| ||||||||||| || ||||||||| | ||||| Sbjct 155169 CAAGGCCCTCTACAAGACTGTCTGGGAGATCTCTCAGCG 155207 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 ||||| || | |||| || |||| |||||| || |||| ||| ||||||| || Sbjct 154333 GAGACTGGAAACCCCTTTATGTTGTATAAGGACGCTTGCAACAGAAAGAGCAACCAGAAG 154392 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 ||||||| ||| ||||| || || ||||| |||||||||||||| | ||||| Sbjct 154393 AACCTCGGAACTATCCGTAGCTCCAACCTCTGCACTGAGATTGTCGAGTACAGCGCTCCG 154452 Query 94606 GACGAGATTGCTGTGTGTAACCTGG 94630 ||||| |||| || |||||| ||| Sbjct 154453 GACGAAGTTGCAGTTTGTAACTTGG 154477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721425180520