Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq117 125 7e-24 seq91 118 1e-21 seq89 104 2e-17 >seq117 Length=965375 Score = 125 bits (138), Expect = 7e-24 Identities = 338/510 (66%), Gaps = 29/510 (6%) Strand=Plus/Minus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAG-AGCGACACCGCCACGCTGGCCGAGCG 52399 || |||||||| ||||| || |||||| || | || | |||| | || |||| Sbjct 188406 AAGAAGGCTCATTGGGCCATTCGCTGGATCCAGGACCGTGAGT-CCACCTTCGCTCAGCG 188348 Query 52400 CATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTT 52459 | || ||||||||| || || ||| | || || || || |||||| ||||||| Sbjct 188347 TCTTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATCTT 188288 Query 52460 TTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCG 52519 | | || | | ||| | ||||| || || || ||| ||||||| |||| || || Sbjct 188287 CTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTTACTTTCTCCAACGAGCTGATTTCTCG 188228 Query 52520 CGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTAC---------AAGACGCGCGT 52570 ||| ||||| || ||||||||||| || ||||| | | | || | ||| Sbjct 188227 CGATGAAGGTCTTCACACGGACTTCGCTTGCCTGTTGTTCTCTCATCTCAACAACCGC-- 188170 Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630 || | || | || | || || ||| ||| || || || || || || Sbjct 188169 --CCCAGCAAGCAGGTTGTG-CAGGA-------CATCATCACTGAAGCTGTCGCAATTGA 188120 Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC-A 52689 ||||| || | |||| || || || || | || || |||||||| | || || | Sbjct 188119 GAAGGAATTCCTAACGGATGCCCTCCCAGTTGCCCTTCTCGGCATGAATTC-CAATCTTA 188061 Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG--CAGCCAAA 52747 ||||| |||| ||||||||||| || ||| | || |||| ||| || |||| || Sbjct 188060 TGTGCCAGTATATCGAGTTTGTTGCTGATAGACTCCTGGTTGCGCTTGGCAACAGC--AA 188003 Query 52748 GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGAC 52807 ||||| |||| | ||| || || || || ||| ||||||| || || | || || || Sbjct 188002 GTACTACAACTCCACCAACCCATTCGACTTCATGGACAACATCTCCCTGGCTGGTAAAAC 187943 Query 52808 CAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||| ||||||||||| || ||||| || Sbjct 187942 CAACTTCTTCGAGAAGCGCGTTGGCGACTA 187913 >seq91 Length=644249 Score = 118 bits (130), Expect = 1e-21 Identities = 138/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||||||| |||||| |||||||| || ||||| | | ||| Sbjct 240259 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGA 240200 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTG 138542 | |||||||| |||||||| || || || || ||||| || | ||||| || | ||| Sbjct 240199 TAAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC-CTGGATCTTTGTCTTGACGTTG 240141 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||||| ||||||| || |||| || | || ||||| ||||| || || || Sbjct 240140 -TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCAC 240082 Query 138603 AAA 138605 || Sbjct 240081 GAA 240079 >seq89 Length=200026 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||| | | | |||||||| ||||||||||||||| | Sbjct 23374 CCACCACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 23433 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || ||||| | |||| | |||||| |||||||| || Sbjct 23434 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGA 23493 Query 138508 ATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| ||| | || |||| || | |||||| | ||||| || Sbjct 23494 ATACCCTCCTTATCCTGGATCTTTGTCTTGACATTG-TCGATAGTGTCGCTAGACTCAAC 23552 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||||| || | || || ||||| || || || || Sbjct 23553 CTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTGAC 23588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260619658640