Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq89 113 4e-20 seq219 84.2 2e-11 >seq89 Length=200026 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | || || || || || ||||||||||||||||| || || Sbjct 23143 ATTCCACCACGAAGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCA 23202 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || ||||| ||| | || | ||||||||||| || Sbjct 23203 GACAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGG 23262 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || |||||||||| | ||||| | | || | || | ||||||||| || || Sbjct 23263 GGAATTCCCTCCTTATCTTGAA-TCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGATTC 23321 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| || | || || || || || || || ||||| || ||||| Sbjct 23322 GACTTCGAGTGTGATAGTCTTTCCCGTAAGGGTCTTCACAAAGATCTGCAT 23372 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| |||||||| || ||| || ||| | || |||| || Sbjct 23691 TGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCGTCCTCCAGCTGC 23750 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| || ||||| || || ||||||||||| || ||||||| | || Sbjct 23751 TTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGAA-TCTT 23809 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | | || | || | ||||||||| ||||| || || ||||| | || ||||| || Sbjct 23810 TGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGT 23869 >seq219 Length=270999 Score = 84.2 bits (92), Expect = 2e-11 Identities = 184/276 (67%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| || || ||| || || ||||| ||||| || ||| | || | ||||| | Sbjct 153567 AAGGTGGCAGAGCGTCCCCAGCACATGCTGATGCGGGTTGCTGTTGGAATACACGGCAAC 153626 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 || || |||| || | || || || | ||||||||||| || | || || || || Sbjct 153627 GATATTGAAAGGGCCATTGAGACATATAACTTGATGTCTCAGAAGTACTTTACCCATGCC 153686 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || ||| ||||| |||||||| | ||||| || | || ||||| || || Sbjct 153687 TCGCCGACTCTGTTCAATGCCGGCACTCCCCAGGCTCAGCTGGCCTCATGTTTCCTGGTC 153746 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || | | ||| |||||| ||||||||||| || ||| |||||| ||||| Sbjct 153747 GATATGAGAGCAGATAGCATCGAAGGTATCTATGATACCTTGAAGACCTGCGCGATGATT 153806 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCAC 123173 ||||| || ||||| || || | ||||| ||| Sbjct 153807 TCCAAGACTGCAGGCGGTATTGGTCTCAACGTCCAC 153842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001578438520