Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq117 111 2e-19 seq219 104 3e-17 seq221 86.0 8e-12 >seq117 Length=965375 Score = 111 bits (122), Expect = 2e-19 Identities = 303/460 (66%), Gaps = 22/460 (5%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| || || ||| | ||| ||| || ||||| Sbjct 187912 GTAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTTTTACCAGCCAGGGAGATGTTGTCCAT 187971 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTG--GC--ACCCCAATCTGTTTGAG 127344 || || |||||||| | ||||| | | ||| || || | | ||| | || Sbjct 187972 GAAGTCGAATGGGTTGGTGGAGTTGTAGTACTTGCTGTTGCCAAGCGCAACC------AG 188025 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||| | ||| | || |||| || |||| |||| | || ||||| |||| || Sbjct 188026 GAGTCTATCAGCAACAAACTCGATATACTGGCACATAAGATTGGAATTCATGCCGAGAAG 188085 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | | |||||| || ||| | ||| |||||||||| | |||||||| | ||| Sbjct 188086 GGCAACTGGGAGGGCATCCGTTAGGAATTCCTTCTCAATTGCGACAGCTTCAGTGATGAT 188145 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG---- 127520 | | || | | | | | || | ||| | | ||| ||| | |||| Sbjct 188146 GTCCTGCACAACCTGCTTGCTGGGGCGGTTGTTGAGA----TGA-GAGAACAACAGGCAA 188200 Query 127521 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 | || || ||| ||||| || || || || || || || || ||||| ||||| Sbjct 188201 GCGAAGTCCGTGTGAAGACCTTCATCGCGAGAAATCAGCTCGTTGGAGAAAGTAAGACCA 188260 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | || ||||||||||||||||| || | ||| || |||||||||||||| Sbjct 188261 GGCATCAAGCCACGCTTCTTCAACCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGATG 188320 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || ||| ||||| || | ||||||| || |||| Sbjct 188321 CCTTCAACAGCGGCGAAGGCGACAAGACGCTGAGCGAAGG 188360 >seq219 Length=270999 Score = 104 bits (114), Expect = 3e-17 Identities = 261/392 (67%), Gaps = 11/392 (3%) Strand=Plus/Minus Query 116660 ACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTA 116718 ||||| |||||| || |||||||| ||||| | || | || | || || ||||||| | Sbjct 154203 ACTTTTCGTAGAGAGCGTCAAACTCGTCACC-ATAGACATCAGCCAGGCCAGGTGCCTCA 154145 Query 116719 TCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 116778 | || ||||| || | ||| | ||| |||||||||||||||| || || |||||| Sbjct 154144 TTCGGGCAGAAAAGTGTCCAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGG 154085 Query 116779 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 116838 |||| || || |||| || || ||| | | || || | || || || || Sbjct 154084 GTCCAAAGAGCGTAGAAAAGGTCACGAGCTCTGACCTCCTCCTTTCCATGGTTTTTGCGG 154025 Query 116839 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC 116897 | ||||| || || | | ||| |||||||| ||||||||||| | || | | |||| Sbjct 154024 AGATCCAAGAATTCGAAAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCC 153965 Query 116898 -----CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGC 116952 |||| ||| |||| | || || ||||| || ||| ||||| || ||| Sbjct 153964 GGCCGCTTG---TTTCCACCCTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGC 153908 Query 116953 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTG 117012 || || | ||| |||| ||| ||| || || || ||| ||| |||| | | Sbjct 153907 ATAGGGACGATTCCATTAGAAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGG 153848 Query 117013 ACATCGTGGATGTGCATACCAATACCCCCTGC 117044 | ||||| || | ||||||||| ||||| Sbjct 153847 ATTCGGTGGACGTTGAGACCAATACCGCCTGC 153816 >seq221 Length=103995 Score = 86.0 bits (94), Expect = 8e-12 Identities = 224/340 (66%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 176638 GAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATA 176697 ||||||||||||||| ||||||| |||| ||| ||||||||||| | ||||||| Sbjct 59492 GAGACCCTTAATGTGACTTCCATCGTGATCCTGATCGGTCATAATCATCAAGTGACCATA 59433 Query 176698 GCGAAGCTCGGAAACATCTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAG 176757 || || || ||| ||| ||||| ||||||||||| | || ||||||| Sbjct 59432 TCGGAGGCCGCGCGTATCGGTATATTCCTTCTTATGTTGAAGACCAAGAAAGTTCTTGAT 59373 Query 176758 ATCATTGAACTCTTGGTTT---GATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTT 176814 || | || |||||| ||| ||| | |||| | || || || |||||||| Sbjct 59372 ATTCTGGATCTCTTGATTTTGCGATATCTGTTG---AAACGAGGCATCACGGACATTGAG 59316 Query 176815 ACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGC 176874 | ||| || || || ||||| ||||| | |||| | || || || | | || || Sbjct 59315 AAGCTTTCCTCGCAGGGGGAAGACACCAAACAGATCCGGTCCGACAACTGCTCGTCCTGC 59256 Query 176875 AACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACT----TTCCAG 176930 | || | | || || |||||||| || || | || || || || | | || Sbjct 59255 CATGGCCAAGCCTTTAGCTGAATCACCTTCGGTAAGAATCAGTGTGCAGTGATGTCCCTC 59196 Query 176931 ATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGG 176970 ||| || || |||||||| |||||| || |||||| Sbjct 59195 CTTG----GTTCCTGCCTTGTTTGCATCGGTCAGCTTGGG 59160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504999042920