Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq89 150 4e-31 seq91 105 2e-17 seq238 86.0 1e-11 >seq89 Length=200026 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || |||||||| || || || |||||||||| |||||||||| || || Sbjct 23152 CGAAGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGACAGGGTA 23211 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||| |||||||| || || |||||||| || |||||| Sbjct 23212 CGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCCC 23271 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||||||| ||| ||| |||| |||||| | | ||| || || | Sbjct 23272 TCCTTATCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGATTCGACTTCGAGT 23331 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || |||||||| || || Sbjct 23332 GTGATAGTCTTTCCCGTAAGGGTCTTCACAAAGATCTG 23369 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||| || |||| ||||||||||| || ||| | ||||| Sbjct 22933 AGGACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCC 22992 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| ||||| |||||||||||||| || ||| ||||||||| ||| Sbjct 22993 TCAAGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCC 23052 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||||||| || | || || | | |||||| || | ||||| ||| Sbjct 23053 TGGATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTC 23112 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || ||||| || || || Sbjct 23113 TTTCCCGTAAGGGTCTTCACGAAGATCTG 23141 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||| || ||||| || |||||||| || | ||||||||| | || || Sbjct 23380 CGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTG 23439 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| | ||||||||||||||| ||| || Sbjct 23440 CGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCC 23499 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| || |||| ||||| | | || || || | Sbjct 23500 TCCTTATCCTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCAACCTCGAGG 23559 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| || ||||| || || || Sbjct 23560 GTGATAGTCTTGCCAGTGAGGGTCTTGAC 23588 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||| || ||||| |||| |||||||| | | || | || || Sbjct 23682 AGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCGTCC 23741 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| | ||||||||| || ||| ||| ||||| || Sbjct 23742 TCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCT 23801 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 23802 TGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGATGGTC 23861 Query 199598 TTACCCGT 199605 || || || Sbjct 23862 TTGCCAGT 23869 >seq91 Length=644249 Score = 105 bits (116), Expect = 2e-17 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| || ||| | ||||| || |||||||| || || |||| Sbjct 240259 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGA 240200 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | ||||||||||||||||| || || || ||||| |||||| ||| ||| | Sbjct 240199 TAAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGT 240140 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | || || || | || || ||||||||||| || || ||||| | Sbjct 240139 CGATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACGA 240080 Query 199620 A 199620 | Sbjct 240079 A 240079 >seq238 Length=427615 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| |||| ||||||||| | | || | || || Sbjct 50089 AGCACGAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCC 50030 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 || |||||||| || |||||||| || ||||||||||| ||| Sbjct 50029 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGA 49988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178917264884229