Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq89 120 3e-22 seq238 118 1e-21 seq91 111 2e-19 >seq89 Length=200026 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| || ||||| | || |||||| || || ||||||||||| || ||||| | Sbjct 23385 ACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCC 23444 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| || ||||| ||||| ||||||||||| | || | | |||||| Sbjct 23445 GTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTT 23504 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| |||||| | | | |||||||| || || || || | ||||| Sbjct 23505 ATCCTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCAACCTCGAGGGTGAT 23564 Query 46558 GGTTTTGCCCGTCAGCGTTTTAAC 46581 || ||||| || || || || || Sbjct 23565 AGTCTTGCCAGTGAGGGTCTTGAC 23588 Score = 111 bits (122), Expect = 2e-19 Identities = 128/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||||||||| || || || |||| || ||||||||||| || || Sbjct 23703 TCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAG 23762 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| |||| || | || |||||||| ||||| |||| | ||| Sbjct 23763 ATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGAATCTTTGTCTT-AACGTT 23821 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | |||||| || || || |||| |||||||| ||||| |||| Sbjct 23822 GTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGTCA 23871 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||||||||||||||| || || || || | || || |||||||| || ||||| Sbjct 23182 TCCTTTTGGATATTGTAGTCAGACAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAG 23241 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||| |||||||| | || | | |||||| || ||||| |||| | ||| Sbjct 23242 ATAAGGCGTTGCTGGTCAGGGGGAATTCCCTCCTTATCTTGAATCTTTGTCTT-AACGTT 23300 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| ||||| || || | ||||| || || ||||| || || || || Sbjct 23301 GTCGATGGTGTCGGAGGATTCGACTTCGAGTGTGATAGTCTTTCCCGTAAGGGTCTTCAC 23360 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 23361 AAAGATCTGCAT 23372 >seq238 Length=427615 Score = 118 bits (130), Expect = 1e-21 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| || |||| ||| |||||| ||||| ||||||||||| || ||||| | Sbjct 50093 ACGGAGCACGAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCC 50034 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||||||||| ||||| |||| |||||||||||||| || | || |||||| Sbjct 50033 GTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTT 49974 Query 46498 GTC 46500 ||| Sbjct 49973 GTC 49971 >seq91 Length=644249 Score = 111 bits (122), Expect = 2e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| ||||| || | || ||||||||||| || || || | Sbjct 240259 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGA 240200 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | ||||||||||| | || | || |||||||||| |||||| |||||| ||| | Sbjct 240199 TAAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGA-CGTTG 240141 Query 46524 CC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||||||||| || || || | || || || || |||||||| || || || Sbjct 240140 TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACG 240081 Query 46583 AAG 46585 ||| Sbjct 240080 AAG 240078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236372207240