Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq117 131 2e-25 seq91 104 2e-17 seq89 104 2e-17 seq238 102 8e-17 >seq117 Length=965375 Score = 131 bits (144), Expect = 2e-25 Identities = 195/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| || ||| | || ||||| | |||||| || ||| || || Sbjct 188531 GTAGGTGTCGATGAGCAGAGAGTACGTCTCAGAGTGGATGTTCTCGATCATGATCTGGAA 188590 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| ||||| || | ||| || || | ||||| || || || || Sbjct 188591 ACCATAGAAGCAACGCGCTTCAGGAATCTGGACCTCGCCACTAAAACGTTCCACAAGGTT 188650 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 || || ||||| || ||| |||||||| || || || ||||| |||||| | || Sbjct 188651 CTCATTCACGATCCCATCGGAAGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAGTAACG 188710 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||||||| ||| | ||||||| | ||| ||||||| ||| | ||||| Sbjct 188711 CTCGTCATCGTTCAGGCGATTGTGCCAGTCGTGAAGGTCTTTGGACAAGTCGATTTCCTC 188770 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || |||||||| || |||||||| Sbjct 188771 AGCTGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 188806 >seq91 Length=644249 Score = 104 bits (114), Expect = 2e-17 Identities = 135/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT- 38311 ||||| || || || ||||| || || || ||| ||||||||||| | | ||||| | | Sbjct 240079 TTCGTGAAGACCCTGACGGGTAAGACTATTACCCTCGACGTCGAGTCGAGCGACACCATC 240138 Query 38312 GCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | |||| | |||| ||| |||| ||||| ||||| || ||| | ||||| ||||| | Sbjct 240139 GACAACG--TCAAGACAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTC 240196 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | || || || ||||| || || | || || || | ||||||||||||||| | Sbjct 240197 TTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTGAGCGACTACAACATCCAGA 240256 Query 38431 AGG 38433 ||| Sbjct 240257 AGG 240259 >seq89 Length=200026 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || ||||| || || ||||| |||| ||||| || || Sbjct 23372 ATGCAGATCTTTGTGAAGACCCTTACGGGAAAGACTATCACACTCGAAGTCGAATCCTCC 23313 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||| ||| || | || || |||||||||||| | ||||| Sbjct 23312 GACACCATCGACAACG-TTAAGACAAAGATTCAAGATAAGGAGGGAATTCCCCCTGACCA 23254 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | ||| || || ||||| || || | || ||||| |||||||| Sbjct 23253 GCAACGCCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTGTCTGACTACAA 23194 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||||||||| | || || || Sbjct 23193 TATCCAAAAGGAATCTACCCTTCA 23170 Score = 104 bits (114), Expect = 2e-17 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| || |||||| |||| || ||| | | ||||| | Sbjct 23590 TCGTCAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTTGAGTCTAGCGACACTATCG 23531 Query 38314 A-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | || | | |||| ||| |||| || || ||||| |||||| | ||||| ||||| | Sbjct 23530 ACAATG--TCAAGACAAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAGCAGCGTTT 23473 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| || || ||||| || |||| |||||||| |||||||||||| || || Sbjct 23472 GATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAA 23413 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| | || || ||| | || ||||| Sbjct 23412 GGAGTCCACCCTCCATCTCGTCTTGCGT 23385 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || ||||| || |||||||| |||| || || | | Sbjct 23145 AATGCAGATCTTCGTGAAGACCCTTACGGGAAAGACCATCACACTCGAGGTAGAATCTTC 23086 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 ||| | | | |||| | |||| ||| |||| ||||| || |||||||| | || Sbjct 23085 CGATACTATTGATAACG--TGAAGACAAAGATCCAGGACAAGGAAGGAATTCCTCCAGAT 23028 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||||| |||||| || ||||| || || | || || || |||||| Sbjct 23027 CAGCAGCGTCTCATTTTCGCGGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCTGACTAC 22968 Query 38421 AACATCCAAAAGGA 38434 |||||||| || || Sbjct 22967 AACATCCAGAAAGA 22954 >seq238 Length=427615 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || || ||||||| ||||| || || | ||||||||| ||||| || Sbjct 49971 GACAAGGAGGGCATCCCTCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAG 50030 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| |||||||| ||||||||||||||| ||||| | || ||||| | ||||| Sbjct 50031 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACTCTGCACCTCGTGCTC 50090 Query 38457 CGTTTGAGAGGCGG 38470 ||| || | || || Sbjct 50091 CGTCTGCGTGGTGG 50104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171005630080