Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq89 98.7 4e-15 seq171 91.5 6e-13 >seq89 Length=200026 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || ||||| || || || || ||||| || Sbjct 23372 ATGCAGATCTTTGTGAAGACCCTTACGGGAAAGACTATCACACTCGAAGTCGAATCCTCC 23313 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || |||| ||| |||||||||||||| |||||||| ||||| || Sbjct 23312 GACACCATCGACAACGTTAAGACAAAGATTCAAGATAAGGAGGGAATTCCCCCTGACCAG 23253 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || ||| | || || || ||||| ||||| | || || | || || ||| Sbjct 23252 CAACGCCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTGTCTGACTACAAT 23193 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 23192 ATCCAAAAGGAATCTACCCTTCAC 23169 Score = 91.5 bits (100), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || || || || || || || || || || ||||| || Sbjct 23145 AATGCAGATCTTCGTGAAGACCCTTACGGGAAAGACCATCACACTCGAGGTAGAATCTTC 23086 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||| | || ||| || || || ||||||||||||||||| ||||| Sbjct 23085 CGATACTATTGATAACGTGAAGACAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCA 23026 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | |||||| | || || || ||||| ||||| | ||| || | || || || Sbjct 23025 GCAGCGTCTCATTTTCGCGGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCTGACTACAA 22966 Query 391229 TAT 391231 || Sbjct 22965 CAT 22963 >seq171 Length=700151 Score = 91.5 bits (100), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || |||| ||||| || |||||||| || || || | || || || Sbjct 95509 GTTACTCATGCCGTTGTTACCGTTCCTGCCTATTTCAACGACGCCCAGAGACAGGCCACC 95568 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || ||| || ||| | ||||| ||||| | |||| |||||||| || Sbjct 95569 AAGGATGCCGGTACTATCGCCGGTCTTAATGTCCTTCGTGTCGTTAACGAACCTACCGCC 95628 Query 451433 GCTGCTCTAGCATATGGACT 451452 || ||| | ||||||||||| Sbjct 95629 GCCGCTATCGCATATGGACT 95648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975711134912996