Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq122 347 2e-90 seq51 167 3e-36 seq171 93.3 5e-14 seq58 86.0 8e-12 >seq122 Length=243171 Score = 347 bits (384), Expect = 2e-90 Identities = 764/1142 (67%), Gaps = 15/1142 (1%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | ||||| || || ||||| | || ||||| || || |||||||||||||| Sbjct 202171 TCACCGGACAAGATAGCAGCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTG 202230 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||| || | || | | | | || | || ||| Sbjct 202231 ATGGACTTGTTGGGCTCCTT---GTTGAAGAAGTCGGCAACAAGACGCTGGACCTTGGGG 202287 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || ||||| | |||| || | | || || |||| ||| | | Sbjct 202288 ATACGAGTAGAACCGCCGACAAGGACGACATCGTCGATGGAGGACTTGTCGACCTTGGCG 202347 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || ||||| || ||||| ||||| | |||| ||||| ||| Sbjct 202348 TCACGGAGGACACGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCACAGCTCC 202407 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| ||||| || ||||| || ||||| |||| || || | | || ||||| Sbjct 202408 TCGAAACGAGCACGAGTGATGGAGGTGTAGAAGTCAATACCCTCAAAGAGAGAGTCAATC 202467 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | ||||| | || ||||| || ||||| || | || || Sbjct 202468 TCGATGGAGGTCTGGGCGGCGGAAGAGAGGGTACGCTTGGCACGCTCGCAGGAAGTGCGG 202527 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | |||||| || ||||| | ||| | | ||| ||||| || || || || ||||| Sbjct 202528 AGACGACGGAGAGCACGAGCGTTGGTCGTCAGATCCTTCTTGTGCTTGCGCTTGAACTCA 202587 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | |||||| | ||| | ||||| || |||||||||||||| || || || Sbjct 202588 GCGACGAAGTGGTTGACGAGGCGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTCACCA 202647 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 ||||| | ||||||||| |||||||| | |||||| | | | || ||||| || ||| Sbjct 202648 GCGGTGGATTTGACTTCGAAGATACCCTCCTCAATGGTCAGGAGGGAGACATCGAAAGTA 202707 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 |||||||||| ||| || || || ||||| || | || ||||| || |||||| Sbjct 202708 CCACCACCCAAGTCGAAGATCAGGACGTTGCGCTCACCCTCGCCCTTCTTGTCAAGACCG 202767 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 || ||||| || || || || || || || || ||||| || ||| || ||||||||| Sbjct 202768 TAGGCGATGGCAGCGGCGGTAGGCTCGTTGATGATACGGAGGACGTTGAGACCAGCAATA 202827 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | || || || || || || || || || ||||| |||||||| ||||| || | | Sbjct 202828 AGACCGGCGTCCTTGGTGGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGTAATG 202887 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| |||| | |||||| || || || || | || ||| ||| | || Sbjct 202888 ACAGCGTTGTTGACAGTGCCACCGAGGTAGGACTCGGCAGTCTCACGCATCTTGATCAGG 202947 Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849 ||||| || || || || || | | ||||| || || || || || || || || || Sbjct 202948 ACCATAGAGGAGATTTCCTCGGGGGTGAACTGCTTGGTCTCGCCCTTGAACTCGACCTCG 203007 Query 7850 ATCATGGGTTTATCCGCAGCACC---GGGGATAACCTTATACGACCAATCTTTCATATCG 7906 || ||||| || || |||| | || ||||| | | ||| | ||||| || Sbjct 203008 ATGATGGGCTT----GC--CACCCTTGTCGACGACCTTGAAGGGCCAGTGCTTCATGTCA 203061 Query 7907 TCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTG 7966 ||||||| ||||| ||| | ||||| |||||||| || || || || ||| Sbjct 203062 GACTGGACCTCGGCGTCCGCAAAACGACGACCGATGAGACGCTTGGCGTCGAAGACGGTG 203121 Query 7967 TTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTT 8026 || | |||||||||||| |||||| | || || || ||||| | ||| || | Sbjct 203122 TTGTGGGGGTTCATGGCGACCTGGTTCCTGGCGGCATCACCGATCAAACGCTC---GGTG 203178 Query 8027 TCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCT 8086 || || || || ||| | || || || || || || || ||||| || || || || || Sbjct 203179 TCGGTGAATGCAACGAAGGAAGGAGTGGTGCGGTTACCCTGGTCATTGGCGATGATCTCA 203238 Query 8087 ACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATT 8146 | |||||| | | ||| ||||| || || || || ||||| | |||||| |||| | Sbjct 203239 ATGCGGTCATCTCTGAAGAAACCGACACAGGAGTAGGTCGTTCCCAGATCAATTCCGACT 203298 Query 8147 GC 8148 || Sbjct 203299 GC 203300 >seq51 Length=40670 Score = 167 bits (184), Expect = 3e-36 Identities = 365/541 (67%), Gaps = 7/541 (1%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||||||||| ||||| |||||||| | | ||| || | || || | | || Sbjct 4159 AGATCCTCAAAACGAGCACGAGTAATGGAGGCGTTGAAGTCCTCTCCATCAAAGAGAGAG 4218 Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 || || || | || || || | | || || || || ||||| |||||||| ||| Sbjct 4219 TCGATCTCCACTGTAGTCTGAGTAGCATTGGACAAAGTACGTTTTGCCCGCTCACAGGCC 4278 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423 |||| || ||||| || || | |||| || |||| ||| ||| | || | | Sbjct 4279 GTTCTCAAGCGACGCAGAGCTCTGGGGTCGCCTGAAAGATCCTTCCCACTCTTTCTCTGG 4338 Query 7424 AACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGT 7482 ||||| | ||||| |||| |||| | | ||| ||||| | ||| || | ||| || Sbjct 4339 AACTCCTTCTTGAAGTAATCGA-GGAGATTTGTATCAAAATCCTGACCTCCGAGGTGAGT 4397 Query 7483 ATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATC 7542 ||| || || || || |||||| || | || |||| |||||| | | |||||||| Sbjct 4398 ATCACCGGCAGTAGCCTTGACTGTGAAAACGCCCCCTTGAATGTTCAGAAGAGAAACATC 4457 Query 7543 AAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA-- 7600 ||| || ||||| || || ||| |||| || || || || | ||| || | Sbjct 4458 AAAAGTTCCACCTCCAAGATCATAAATCAGGACATTGCGCTCCTTGTCAGCCTTTCCAGA 4517 Query 7601 -TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCA 7658 | || ||||| || ||||| || || || || || || || || | || |||| || | Sbjct 4518 CCCAAGTCCGTAGGCAATAGCAGCGGCTGTAGGCTCGTTGATGATCCGGAGGACA-TTGA 4576 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||||||||||| | ||||| || || ||||| ||||| ||||| ||||| || | Sbjct 4577 GGCCAGCAATAGCACCGGCATCCTTTGTAGCTTGACGTTGATTGTCGTTGAAGTACGCGG 4636 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 | || || | || || | | || ||||| || || | || |||||||| ||||||| Sbjct 4637 GTACTGTGATCACGGCTTTCTCTACCTTCTTTCCAAGTTTCGTTTCCGCGACTTCTTTCA 4696 Query 7779 T 7779 | Sbjct 4697 T 4697 >seq171 Length=700151 Score = 93.3 bits (102), Expect = 5e-14 Identities = 229/340 (67%), Gaps = 7/340 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||||||||||| ||| || || || || || || || || |||| ||| Sbjct 95792 TCAAAGTCTTCACCACCCAGGTGAGTGTCACCAGCAGTAGCCAAAACCTCGAAGAAACCA 95733 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | || ||||| || |||||||| || |||||| | | || || Sbjct 95732 TTATCAATTGACAGAAGAGAGACATCGAAGGTACCACCGCCAAGGTCATAGACGATGACC 95673 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | | || || | |||| || || || || |||||||| || || || ||||| Sbjct 95672 T--GGCGC-TCATCACCGGTCTTGTCAAGTCCATATGCGATAGCGGCGGCGGTAGGTTCG 95616 Query 7637 TTAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 |||| | ||||| |||| || || || || ||||| | ||||| || || || |||| Sbjct 95615 TTAACGACACGAAGGACA-TTAAGACCGGCGATAGTACCGGCATCCTTGGTGGCCTGTCT 95557 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC-TTTCTTACCGA 7754 || | ||||| || ||||| || || || || || || | || || | |||| || | Sbjct 95556 CTGGGCGTCGTTGAAATAGGCAGGAACGGTAACAACGGCATGAGTAACGTCTCTT-CCAA 95498 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 | || || ||||| ||||| || ||||||||| Sbjct 95497 GGTAGCTCTCAGCGATCGACTTCATCTTTCCAAGAACCAT 95458 >seq58 Length=707594 Score = 86.0 bits (94), Expect = 8e-12 Identities = 177/258 (69%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 |||||||| || ||||||||||||| ||| |||| || || | |||||| Sbjct 368853 GAAACATCGAAGGTACCACCACCCAAGTCGAAAA-CAG--CGACAACACGGTCGTC---C 368800 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | ||| || |||||||| |||| ||| || || || || || || | || ||| || | Sbjct 368799 TCCTTCTCCAGACCGTAGGCGAGAGCAGCAGCAGTAGGCTCGTTGACAACACGGAGGACG 368740 Query 7655 TTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || ||||| || | ||| ||||| || || || || || || || ||||| ||||| Sbjct 368739 TTAAGACCAGCGAT-CTGGCCAGCATCCTTGGTTGCCTGACGCTGGGAGTCGTTGAAGTA 368681 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || || || || || || || | | |||| ||| | |||||| || || | || Sbjct 368680 TGCAGGAACAGTAACAACGGCATTCTTGACGGGCTTGCTGAGATAGTTCTCGGCAGTCTC 368621 Query 7774 TTTCATTTTGGTAAGAAC 7791 ||||| || |||||| Sbjct 368620 CTTCATCTTTCCAAGAAC 368603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130521461080