Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq117 114 2e-20 seq221 82.4 9e-11 >seq117 Length=965375 Score = 114 bits (126), Expect = 2e-20 Identities = 304/457 (67%), Gaps = 18/457 (4%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| ||| |||| || |||| || || |||||| || |||||||||||||| |||| Sbjct 188360 CCTTCGCTCAGCGTCTTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGATCCT 188301 Query 102232 TCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 | ||| | || | ||| | |||||||| || | ||||| ||||| ||||||||| Sbjct 188300 T-TGCATCCATCTTCTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTTACTTTCTCCAAC 188242 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTA 102350 ||||| || ||||| || || || || ||| || || || || || || || Sbjct 188241 GAGCTGATTTCTCGCGATGAAGGTCTTCACACGGACTTCGC-TTG--CCTGTT---GTTC 188188 Query 102351 TTGCGTATTAA------ACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTT 102404 | | | | || || | | || | | || || | | ||||| || Sbjct 188187 TCTCATCTCAACAACCGCCCCAGCAAGCAGGTTGTGCAGGACATCATCACTGAAGCTGTC 188128 Query 102405 GAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCT 102464 | |||||||||| |||| || ||||||||| ||| || || |||| |||||||| Sbjct 188127 GCAATTGAGAAGGAATTCCTAACGGATGCCCTCCCAGTTGCCCTTCTCGGCATGAATTCC 188068 Query 102465 GAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTG 102524 | |||| | | ||||| |||| ||| |||||||| | || | | | || Sbjct 188067 AATCTTATGTGCCAGTATATCGAGTTTGTTGCTGATAGACTCCTG--GTTGCGCTTGGCA 188010 Query 102525 CCTCCAATT--TGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACG 102582 | ||| | | ||||||| || ||||| ||||||||||| ||||| ||| | | Sbjct 188009 ACAGCAAGTACTACAACTCCACCAACCCATTCGACTTCATGGACAACATCTCCCTGGCTG 187950 Query 102583 GGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 102619 | || || ||||||||||| ||| | ||||| ||||| Sbjct 187949 GTAAAACCAACTTCTTCGAGAAGCGCGTTGGCGACTA 187913 >seq221 Length=103995 Score = 82.4 bits (90), Expect = 9e-11 Identities = 193/289 (67%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 176728 AATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACC 176787 || ||||||||| ||||| || |||| ||| ||| ||||| ||||| | |||| Sbjct 59495 AAGGAGACCCTTAATGTGACTTCCATCGTGATCCTGATCGGTCATAATCATCAAGTGACC 59436 Query 176788 ATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTT 176847 ||| || || || ||| ||| ||||| ||||||||||| | | ||||| Sbjct 59435 ATATCGGAGGCCGCGCGTATCGGTATATTCCTTCTTATGTTGAAGACCAAGAAAGTTCTT 59376 Query 176848 GAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACA-GAGGCATCACGAACATTCT 176906 || || | || |||||| ||| | | |||| ||| | ||||||||||| ||||| Sbjct 59375 GATATTCTGGATCTCTTGATTTTGCGATATCTGT-TGAAACGAGGCATCACGGACATTGA 59317 Query 176907 TACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCG 176966 | ||| || || || ||||||||||| | |||| | || || || | | || | Sbjct 59316 GAAGCTTTCCTCGCAGGGGGAAGACACCAAACAGATCCGGTCCGACAACTGCTCGTCCTG 59257 Query 176967 CAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACA 177015 | | || | ||| || |||||||| || || | || ||||| || Sbjct 59256 CCATGGCCAAGCCTTTAGCTGAATCACCTTCGGTAAGAATCAGTGTGCA 59208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740173086640