Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq117 122 1e-22 seq219 98.7 1e-15 >seq117 Length=965375 Score = 122 bits (134), Expect = 1e-22 Identities = 300/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 ||||| || || | ||| |||||||| || || |||||| | || |||||||| ||||| Sbjct 187913 TAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTTTTACCAGCCAGGGAGATGTTGTCCATG 187972 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAG-ATTGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || ||||||| || | | | |||| |||| ||| || | Sbjct 187973 AAGTCGAATGGGTTGGTGGAGTTGTAGTACTTGCTGTTG-CCAAGCGCAACCAGGAGTCT 188031 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 ||| | ||| |||||||||| | | |||| | |||||||| || | || | Sbjct 188032 ATCAGCAACAAACTCGATATACTGGCACATAAGATTGGAATTCATGCCGAGAAGGGCAAC 188091 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTG 119446 ||||| ||||| | ||| | |||||| || | |||||||| | | |||| || Sbjct 188092 TGGGAGGGCATCCGTTAGGAATTCCTTCTCAATTGCGACAGCTTCAGTGATGATGTCCTG 188151 Query 119447 AATAGTTTCTG-TCGATGGTTTGTTTCTCAAGAGTTTA-AACAACTCTACGGCAAATTCT 119504 | | ||| | | ||| | || | ||| | |||||| || || || Sbjct 188152 CACAAC--CTGCTTGCTGGGGCGGTTGTTGAGATGAGAGAACAACAGGCAAGCGAAGTCC 188209 Query 119505 TGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGT 119564 ||||| |||||||| ||||| || ||||| || ||| ||| |||||||| | Sbjct 188210 GTGTGAAGACCTTCATCGCGAGAAATCAGCTCGTTGGAGAAAGTAAGACCAGGCATCAAG 188269 Query 119565 CCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624 || | ||||| | ||| ||||||| ||| |||||| ||||||||||| || ||| Sbjct 188270 CCACGCTTCTTCAACCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGATGCCTTCAACA 188329 Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 |||||| |||| ||||||| ||| || Sbjct 188330 GCGGCGAAGGCGACAAGACGCTGAGCGAA 188358 >seq219 Length=270999 Score = 98.7 bits (108), Expect = 1e-15 Identities = 232/347 (67%), Gaps = 10/347 (3%) Strand=Plus/Minus Query 109506 CGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTC---GATGATACACTT 109562 |||||||||||| || ||| || |||||| || || ||||| | |||| ||| || Sbjct 155262 CGACTGAGACTGGTCAATGTATGCACCACGGTCTGCAGCCATCTGCAGGATGTTACGCTG 155203 Query 109563 TTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGAT 109622 | || ||||||||||||||||| | |||||| | ||||||| | || Sbjct 155202 AGAG---ATCTCCCAGACAGTCTTGTAGAGGGCCTTGATGGCTGCGGGAATATTGGGAAT 155146 Query 109623 GTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACC 109682 ||| |||| ||| ||||| || | ||| | | |||||| | | ||||||||||| Sbjct 155145 GTTCTGAACAGAACCACCCTCCGCAATAATGCGGTTCTTCATGTTGTCAGACCAGAGACC 155086 Query 109683 GACCTTTTTGAGATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGT 109740 | | || || | || ||| ||| |||||| || ||||| |||||||| Sbjct 155085 CAAGTCGACAAGGTCCTTAAGAAGCCATG--GGTTGACAACTTGGAATTCTCCAGCAAGG 155028 Query 109741 GTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATT 109800 || || ||| ||||| | ||||| || ||||| ||||||||| ||| || || Sbjct 155027 ACTCGGCGAGAGTAAATGTTCGAAGTGTACGGCTCGAAGCACTCATTGAAGCCAAGAATC 154968 Query 109801 TGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCG 109847 || ||| || || ||||| || |||| || | |||||| || Sbjct 154967 TGGCTGGTGCTTGCCGTCGGCATAGGGGCCACCAGCAAACTGTTGCG 154921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973887048600