Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq89 150 4e-31 seq91 118 2e-21 seq238 98.7 2e-15 >seq89 Length=200026 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | |||||||||||| || || || ||||| |||||||| || | || || | Sbjct 23155 AGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGACAGGGTACGG 23214 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || |||||||| || ||||||||||| ||||| ||||| || ||||| || || Sbjct 23215 CCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCCCTCC 23274 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| ||| ||| ||||| || |||||||| || ||| ||||| || || Sbjct 23275 TTATCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGATTCGACTTCGAGTGTG 23334 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| || | || || || || | ||||| Sbjct 23335 ATAGTCTTTCCCGTAAGGGTCTTCACAAAGATCTGCAT 23372 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||| |||||| || || ||||| || | ||||| | ||||| || Sbjct 22936 ACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCCTCA 22995 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || || ||||||||||| ||||| ||||| || Sbjct 22996 AGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGG 23055 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| ||||| ||||| || || ||| ||| || || || || | |||||| Sbjct 23056 ATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTCTTT 23115 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | || || ||||| | |||||| Sbjct 23116 CCCGTAAGGGTCTTCACGAAGATCTGCATT 23145 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||| || || || || |||||||| |||| || || | || || || Sbjct 23684 AACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCGTCCTC 23743 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| | || || || || |||||||||||||| |||||||| Sbjct 23744 CAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTG 23803 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||| ||||| || |||||||| || || || || || || | ||||| Sbjct 23804 AATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGATGGTCTT 23863 Query 195111 TCCTGTCA 195118 || |||| Sbjct 23864 GCCAGTCA 23871 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || || || || |||||||| || ||||| ||||| |||| || || | || || Sbjct 23388 CAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTC 23447 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || ||||||||||| |||||||| | || || ||||| || ||||| || || || || Sbjct 23448 CTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTTATC 23507 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || ||| |||||| || || || ||||| | || || || ||||| | || Sbjct 23508 CTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCAACCTCGAGGGTGATAGT 23567 Query 195108 CTTTCCTGTCAAAGTTTTTACGA 195130 ||| || || | || || |||| Sbjct 23568 CTTGCCAGTGAGGGTCTTGACGA 23590 >seq91 Length=644249 Score = 118 bits (130), Expect = 2e-21 Identities = 136/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| ||| ||||| | ||||| |||||||||||||| || |||||| Sbjct 240257 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATA 240198 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || || ||||| || ||||| || || ||| ||||||||| || Sbjct 240197 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCG 240138 Query 195073 ATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 |||||||| ||| || || || ||||||| ||||| || |||| || || ||| Sbjct 240137 ATGGTGTCGCTCGA---CTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACG 240081 Query 195130 AA 195131 || Sbjct 240080 AA 240079 >seq238 Length=427615 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || ||||| |||| ||| || | || || ||| Sbjct 50086 ACGAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCG 50027 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 |||||||| || |||||||| || || || ||||| ||||| ||||| || |||||| Sbjct 50026 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 49970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477520228129