Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq89 102 5e-17 >seq89 Length=200026 Score = 102 bits (112), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||||| |||||||| ||||| ||||| || || | || |||| || ||||| Sbjct 22941 GTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCCTCAAGCTG 23000 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||||| || || || || || ||||| ||| | || | || |||||||| ||||| Sbjct 23001 CTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTT 23060 Query 34898 CTGT-TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCG 34956 ||| || ||| | || | || | || || |||| || ||||| ||||||| Sbjct 23061 -TGTCTTCACGTTATCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTCTTTCCCG 23119 Query 34957 TGAGAGTCTTCACAAAGATCTGCAT 34981 | || |||||||| ||||||||||| Sbjct 23120 TAAGGGTCTTCACGAAGATCTGCAT 23144 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| || ||| || || || || ||||| || ||| | || |||| || Sbjct 23163 AACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGACAGGGTACGGCCATCCTC 23222 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || || || ||||||||||| | || | |||||||| || Sbjct 23223 AAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCCCTCCTTATCTTG 23282 Query 34892 AATCTTCTGT-TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| ||| || ||| | || | || || || || |||| || || || | Sbjct 23283 AATCTT-TGTCTTAACGTTGTCGATGGTGTCGGAGGATTCGACTTCGAGTGTGATAGTCT 23341 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| || ||||||||||||||||||||| Sbjct 23342 TTCCCGTAAGGGTCTTCACAAAGATCTGCATA 23373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632464492536