Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq89 113 4e-19 seq58 98.7 8e-15 seq51 96.9 3e-14 seq265 91.5 1e-12 >seq89 Length=200026 Score = 113 bits (124), Expect = 4e-19 Identities = 161/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || ||||| ||||| ||||||||| ||| ||||| |||||||| |||| || || | Sbjct 23155 AGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGG--ATATTGTAGTCAGACAGGGTAC 23212 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| ||||| || ||||| || || ||||| | |||||| ||||| |||||||| | Sbjct 23213 GGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCCCT 23272 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | ||||||||||| ||| || || || || || || | | || | | |||||| Sbjct 23273 CCTTATCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAG-GATTCGACTTCGAGT 23331 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||| || || ||||| || || || || || |||||| Sbjct 23332 GTGATAGTCTTTCCCGTAAGGGTCTTCACAAAGATCTGCATA 23373 Score = 96.9 bits (106), Expect = 3e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| || || || || |||||||| || ||||| || ||||| |||| ||||| | Sbjct 22926 GAGCCGAAGGACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGTACG 22985 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| ||||| || ||||| || ||||| || | |||||||| |||||||||||||| Sbjct 22986 ACCATCCTCAAGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTC 23045 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAG 563434 || || || || ||| || || ||||| ||||| | | ||| ||||| | Sbjct 23046 CTTGTCCTGGATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCTAC-CTCGAGTG 23104 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || || ||||| || || ||||| || ||||| Sbjct 23105 TGATGGTCTTTCCCGTAAGGGTCTTCACGAAGATCTGCAT 23144 >seq58 Length=707594 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || ||||| || || ||||| || ||||| || || || |||| Sbjct 368658 ATGCCGTTGTTACTGTTCCTGCATACTTCAACGACTCCCAGCGTCAGGCAACCAAGGATG 368717 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | || ||||| ||||| || || ||| || |||| || |||||||||||||| | Sbjct 368718 CTGGCCAGATCGCTGGTCTTAACGTCCTCCGTGTTGTCAACGAGCCTACTGCTGCTGCTC 368777 Query 550518 TTGCATATGGACTTGATAA 550536 | || || || || || || Sbjct 368778 TCGCCTACGGTCTGGAGAA 368796 >seq51 Length=40670 Score = 96.9 bits (106), Expect = 3e-14 Identities = 111/148 (75%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 550386 AAGAAGTTACGGAT-GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAA 550444 |||||| || || || || || || ||||| || || || || ||| ||||||||| Sbjct 4667 AAGAAGGTAGAGAAAGCCGTGATCACAGTACCCGCGTACTTCAACGACAATCAACGTCAA 4608 Query 550445 GCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCT 550504 ||||| || ||||| || ||||||||| || ||||| || || || ||||| || ||| Sbjct 4607 GCTACAAAGGATGCCGGTGCTATTGCTGGCCTCAATGTCCTCCGGATCATCAACGAGCCT 4548 Query 550505 ACTGCTGCTGCACTTGCATATGGACTTG 550532 || || ||||| |||| || ||||||| Sbjct 4547 ACAGCCGCTGCTATTGCCTACGGACTTG 4520 >seq265 Length=79167 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 390862 ACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATA 390921 ||||| |||||||||| || ||| ||||| || || || ||||| | || ||| Sbjct 62126 ACGGTCCCATCATACTTGACCATAACTTCTTCCAAGGCCTTGACCAATTTCCGCTGAATA 62185 Query 390922 TAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACT 390981 ||||| || || || ||||||| ||||||| |||| ||| ||||| || ||||| | Sbjct 62186 TAACCTGTTTCGGCGGTTTTAACCGCAGTATCGATAAGACCCTCTCTACCAGCCATGGCG 62245 Query 390982 TGGAAGAAAAATTCC 390996 ||||||||||| ||| Sbjct 62246 TGGAAGAAAAACTCC 62260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029280822145630