Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq89 122 7e-23 >seq89 Length=200026 Score = 122 bits (134), Expect = 7e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || || |||||||| || || |||||||| |||| || || | | Sbjct 23678 ACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACC 23737 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||| ||||| || ||||| ||||||||||| |||||||| ||||||||||| || Sbjct 23738 GTCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTT 23797 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||| ||| || || | || | ||||| || | || || || ||||||| Sbjct 23798 GTCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGAT 23857 Query 101434 CGTTTTGCCGGT 101445 || ||||| || Sbjct 23858 GGTCTTGCCAGT 23869 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||||||||| ||||| |||||||| || | | || | | |||| || | ||| Sbjct 23170 TGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGACAGGGTACGGCCATCCTCAAGCTGC 23229 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | || || || || || ||||| || || ||||||||||| ||| Sbjct 23230 TTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCCCTCCTTATCTTGAATCTTT 23289 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||| ||||| || |||| || || || || Sbjct 23290 GTCTTAACGTTGTCGATGGTGTCGGAGGATTCGACTTCGAGTGTGATAGTCTTTCCCGTA 23349 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 23350 AGGGTCTTCACAAAGATCTGCAT 23372 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | ||| ||||| || || || || || ||||| |||| | || | | | Sbjct 23385 ACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCC 23444 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | |||||||| || || ||||||||||| || || || ||||| || || || Sbjct 23445 GTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTT 23504 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTC---AGACGTTTCCACTTCAAGAGT 101430 ||| || || ||| || ||| | || | |||||| |||| || || || || || Sbjct 23505 ATCCTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGAC---TCAACCTCGAGGGT 23561 Query 101431 GACCGTTTTGCCGGT 101445 || || ||||| || Sbjct 23562 GATAGTCTTGCCAGT 23576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277013892459