Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq117 120 6e-22 seq219 113 8e-20 >seq117 Length=965375 Score = 120 bits (132), Expect = 6e-22 Identities = 345/520 (66%), Gaps = 17/520 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| || || || ||| |||||||| || Sbjct 187909 CTGGTAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTTTTACCAGCCAGGGAGATGTTGTC 187968 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATAC-ACCCG-TGTCAGGCCCATCTGTTCCAGC 47956 ||||||| ||| ||||||| | ||| || || | ||| ||| | | |||| Sbjct 187969 CATGAAGTCGAATGGGTTGGTGGAGTTGTAGTACTTGCTGTT--GCCAAGCGCAACCAGG 188026 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || ||| || || ||||||| || | |||| || || |||||||| | ||| Sbjct 188027 AGTCTATCAGCAACAAACTCGATATACTGGCACATAAGATTGGAATTCATGCCGAGAAGG 188086 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGC-ACGGCTTCCCCCACAAT 48075 | || || | || | || || || |||||||| || ||| || ||||| | || Sbjct 188087 GCAACTGGGAGGGCATCCGTTAGGAATTCCTTCTCAAT-TGCGACAGCTTCAGTGATGAT 188145 Query 48076 ---CTGCTTAACGCGGGACTCTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 |||| ||| | | ||| || | |||||| || || | | | || || Sbjct 188146 GTCCTGCACAAC-CTGCTTGCTGGGGCGGTTGTTG---AGATGAGAGA---ACAACAGGC 188198 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | || |||||| |||| | ||||| || || || ||| |||||||||| |||| Sbjct 188199 AAGCGAAGTCCGTGTGAAGACCTTCATCGCGAGAAATCAGCTCGTTGGAGAAAGTAAGAC 188258 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||||||| | || | || || | |||||| || | || || || ||||||||||||| Sbjct 188259 CAGGCATCAAGCCACGCTTCTTCAACCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGA 188318 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 |||| || || || ||||| ||| || | || |||| | | | ||| || Sbjct 188319 TGCCTTCAACAGCGGCGAAGGCGACAAGACGCTGAGCGAAGGTGGACTCACGGTCCTGGA 188378 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| || ||||| | ||||||||| ||||||| || Sbjct 188379 TCCAGCGAATGGCCCAATGAGCCTTCTTCGTGATGCAGGG 188418 Score = 89.7 bits (98), Expect = 1e-12 Identities = 173/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||| |||||||||| | ||||| || ||||||||| || |||||| | || || Sbjct 188552 GTACGTCTCAGAGTGGATGTTCTCGATCATGATCTGGAAACCATAGAAGCAACGCGCTTC 188611 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | | ||| || || || | |||| || |||||||| || |||||||| || Sbjct 188612 AGGAATCTGGACCTCGCCACTAAAACGTTCCACAAGGTTCTCATTCACGATCCCATCGGA 188671 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 ||| || ||||| || ||||| || | ||| | ||||||| | | | || ||| Sbjct 188672 AGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAGTAACGCTCGTCATCGTTCAGGCGATT 188731 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | || | ||||||| || ||| | ||| || | ||||||||||| || Sbjct 188732 GTGCCAGTCGTGAAGGTCTTTGGACAAGTCGATTTCCTCAGCTGTCCAGAAGGAGGCCTC 188791 Query 48661 TGCTTTTTTGTACAT 48675 || || |||||||| Sbjct 188792 GGCCTTCTTGTACAT 188806 >seq219 Length=270999 Score = 113 bits (124), Expect = 8e-20 Identities = 409/635 (64%), Gaps = 15/635 (2%) Strand=Plus/Minus Query 213793 TCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 ||||||| |||| | | || | || ||| ||||| || ||| ||| || ||| || Sbjct 154128 TCCAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGGTCCAAAGAGCGTAGA 154069 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 | ||||| | | || ||| ||| |||| ||||||||| ||||| | || || | Sbjct 154068 AAAGGTCACGAGCTCTGACCTCCTCCTTTCCATGGTTTTTGCGGAGATCCAAGAATTCGA 154009 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGC 213969 | | || |||||||| || |||| |||||| ||||| || ||||||| |||| || | Sbjct 154008 AAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCCGGCCGCTTGTTTCCAC 153949 Query 213970 CCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGG 214029 |||| ||||| || || ||||||| | || || | || || | || || | Sbjct 153948 CCTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGCATAGGGACGATTCCATTAG 153889 Query 214030 ACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGAGAG 214087 | ||||||||||| || || || ||||| | ||| | | | || | | |||| Sbjct 153888 AAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGGATTCGGTGGACGTTGAGA- 153830 Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCC 214147 || || || || || |||||| ||||| |||||| | ||| || || ||| || Sbjct 153829 -CCAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGGTCTTCAAGGTATCATAGATACC 153771 Query 214148 GGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGA 214207 | ||||| || || | | | | || ||| || | ||||| | | || | Sbjct 153770 TTCGATGCTATCTGCTCTCATATCGACCAGGAAACATGAGGCCAGCTGAGCCTGGGGAGT 153711 Query 214208 GCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTA 214267 ||| | ||||| || || || ||||||| | | |||| | ||| | | | || Sbjct 153710 GCCGGCATTGAACAGAGTCGGCGAGGCATGGGTAAAGTACTTCTGAGACATCAAGTTATA 153651 Query 214268 GGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCAT 214327 ||||| | | | || |||| ||| || | ||| || ||||||||| Sbjct 153650 TGTCTCAATGGCCCTTTCAATATCGTTGCCGTGTATTCCAACAGCAACCCGCATCAGCAT 153591 Query 214328 GTGCTGGGGCCTCTCTATGGGTCCTT----TGGGGCCCTTGAGCAGGTAGGAGCGCTCCA 214383 ||||||||| | ||| || |||| | | || | |||||||| || ||||| | Sbjct 153590 GTGCTGGGGACGCTC--TGCCACCTTCCCATTGATCCGT--AGCAGGTATGAACGCTCAA 153535 Query 214384 GAGTCTTGAACCCAAAGTAGGAGTAGGTATGATCG 214418 |||||||||| || ||| | |||| || |||| Sbjct 153534 GAGTCTTGAAACCGAAGAAATTGTAGTTAAAATCG 153500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529458126080