Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq219 98.7 2e-15 seq117 89.7 1e-12 >seq219 Length=270999 Score = 98.7 bits (108), Expect = 2e-15 Identities = 183/263 (70%), Gaps = 8/263 (3%) Strand=Plus/Minus Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACAC-CTGGCGGG 222000 ||| ||||| |||||||| ||||| || | || ||||||| || | | |||| Sbjct 154196 GTAGAGAGC--GTCAAACTCGTCACCATAGACATCAGCCAGGCCAGGTGCCTCATTCGGG 154139 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 || | || |||||| ||| | | |||| || ||| || || || ||| |||| Sbjct 154138 -CAGAAAAGTGTCCAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGGTCCA 154080 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 || || | || || || | | | ||| ||||||| || | |||||| | ||| Sbjct 154079 AAGAGCGTAGAAAAGGTCACGAG--CTCTGACCTCCTCCTTTCCATGGTTTTTGCGGAGA 154022 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 ||||| || || |||| ||||||||||| || ||||| |||| || | ||| || || Sbjct 154021 TCCAAGAATTCGAAAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCCGGC 153962 Query 222179 CGCTTGTTGCCACCCTGATCCAC 222201 |||||||| |||||||||||||| Sbjct 153961 CGCTTGTTTCCACCCTGATCCAC 153939 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || |||||||| ||||| | || || | | ||| | ||| |||||| |||| Sbjct 155055 GTTGACAACTTGGAATTCTCCAGCAAGGACTCGGCGAGAGTAAATGTTCGAAGTGTACGG 154996 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||| ||| ||| || ||||| ||||| || || ||||| || ||||| Sbjct 154995 CTCGAAGCACTCATTGAAGCCAAGAATCTGGCTGGTGCTTGCCGTCGGCATAGGGGCCAC 154936 Query 221236 CAGCAGACTGTTGCGCA 221252 ||||| ||||||||||| Sbjct 154935 CAGCAAACTGTTGCGCA 154919 >seq117 Length=965375 Score = 89.7 bits (98), Expect = 1e-12 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTAC 25868 ||| |||||| || |||||| | |||||||| |||||| | || ||| | || Sbjct 188418 CCCTGCATCACGAAGAAGGCTCATTGGGCCATTCGCTGGATCCAGGACCGTGAGTCC-AC 188360 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 || | |||| || || ||||| || ||||| || |||||||| ||| || || || Sbjct 188359 CTTCGCTCAGCGTCTTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGATCCTT 188300 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACG 25987 ||| ||||||||||| | ||| || || ||||| || || |||||| ||||||| Sbjct 188299 TGCATCCATCTTCTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCT-TACTTTCTCCAACG 188241 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 |||| || | || || ||||| |||| || || || |||||| Sbjct 188240 AGCTGATTTCTCGCGATGAAGGTCTTCACACGGACTTCGCTTGCCTG 188194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841467769280