Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq89 111 1e-18 seq171 87.8 1e-11 >seq89 Length=200026 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| ||||| ||||| ||| ||| || | ||| || |||| || || Sbjct 23151 ACGAAGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGACAGGGT 23210 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||| ||||||||||| || ||||| ||||| || ||||| |||||||| Sbjct 23211 ACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCC 23270 Query 480671 TTCCTTGTCTTGAATCTTT 480689 ||||| |||||||||||| Sbjct 23271 CTCCTTATCTTGAATCTTT 23289 Score = 104 bits (114), Expect = 2e-16 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || || || || || ||||| || || ||||| | || || |||| ||||| Sbjct 22923 ACGGAGCCGAAGGACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGT 22982 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| ||||| |||||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 22983 ACGACCATCCTCAAGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCC 23042 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||| || |||||| || || ||||||||||| Sbjct 23043 TTCCTTGTCCTGGATCTTTGTCTTCACGTTATCAATAGTATC 23084 >seq171 Length=700151 Score = 87.8 bits (96), Expect = 1e-11 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 || |||||| ||| || ||| |||| || |||| ||||| || ||||| || || | Sbjct 95494 TACCTTGGAAGAGACGTTACTCATGCCGTTGTTACCGTTCCTGCCTATTTCAACGACGCC 95553 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 || | || || || || ||||| || | || || ||||||||||| | ||| | || Sbjct 95554 CAGAGACAGGCCACCAAGGATGCCGGTACTATCGCCGGTCTTAATGTCCTTCGTGTCGTT 95613 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875 || ||||| || || ||||| | || ||||| ||||| |||| Sbjct 95614 AACGAACCTACCGCCGCCGCTATCGCATATGGACTTGACAAGA 95656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268166889177476