Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq219 150 5e-31 seq265 111 5e-19 seq114 96.9 1e-14 seq4 89.7 2e-12 >seq219 Length=270999 Score = 150 bits (166), Expect = 5e-31 Identities = 390/591 (66%), Gaps = 5/591 (1%) Strand=Plus/Minus Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969 || |||| |||||| | ||| | ||||| ||| ||||||||||| | || | |||| Sbjct 154108 ACCCGCTTCATAAACAGATCTGGGGTCCAAAGAGCGTAGAAAAGGTCACGAGC-TCTGAC 154050 Query 155970 -TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 ||||| | || || || || || || || |||||||| || ||||| || || Sbjct 154049 CTCCTCCTTTCCATGGTTTTTGCGGAGATCCAAGAATTCGAAAACATCAGCGTGCCAAGG 153990 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGC 156085 ||||| || ||||||||| ||| || |||| ||||||||||| || || | || Sbjct 153989 TTCCAGGTAGATAGCAAAAGCACCCGGCCGCTTGTTTCCACCCTGATCCACGTATCTCGC 153930 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 ||| || ||||| |||| |||||||| | || ||||| |||| ||| ||||||||| Sbjct 153929 AGTATTGTTGAATACACGGAGCATAGGGACGATTCCATTAGAAGAGCCGTTGGTTCCGGC 153870 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 ||| | || || | | || | || | | || |||||||| |||| || Sbjct 153869 AATGTAAGAGCCCGTGGCACGGATTCGGTGGACGTTGAGACCAATACCGCCTGCAGTCTT 153810 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| ||||| ||| | |||| | |||||||| || ||| || ||| Sbjct 153809 GGAAATCATCGCGCAGGTCTTCAAGGTATCATAGATACCTTCGATGCTATCTGCTCTCAT 153750 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 | || | || || | |||| | || || || || ||||| || || || Sbjct 153749 ATCGACCAGGAAACATGAGGCCAGCTGAGCCTGGGGAGTGCCGGCATTGAACAGAGTCGG 153690 Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAG 156385 | ||||| |||| ||||| | |||||| | | |||||||| | | | |||| Sbjct 153689 CGAGGCATGGGTAAAGTACTTCTGAGACATCAAGTTATATGTCTCAATGGCCCTTTCAAT 153630 Query 156386 ATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAAT 156445 || ||||| || | | || |||| |||| ||| ||||| ||||||||| | | Sbjct 153629 ATCGTTGCCGTGTATTCCAACAGCAACCCGCATCAGCATGTGCTGGGGACGCTCTGCCAC 153570 Query 156446 CACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAA 156496 | |||| || || || ||||||| || || ||||| || || ||||| Sbjct 153569 CTTCCCATTGATCCGTAGCAGGTATGAACGCTCAAGAGTCTTGAAACCGAA 153519 >seq265 Length=79167 Score = 111 bits (122), Expect = 5e-19 Identities = 109/140 (78%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||||| | ||||||||||||| |||| ||||| ||| |||| ||||||||| Sbjct 61379 AGAATTTCTTTGAGACGGGGAACACCAAGGGTGACGTT---CTTTGACGAAACACCAGCG 61435 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||||||||| ||||| | || |||| || || ||||| || || |||| Sbjct 61436 AAATGGAAAGTATTAAGAGTCATCTGCGTAGCCGGTTCGCCAATCGACTGAGCAGCAAGA 61495 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| ||||| Sbjct 61496 ACACCAACCATTTCACCTGG 61515 Score = 96.9 bits (106), Expect = 1e-14 Identities = 203/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 302545 ACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATA 302604 |||||| |||||| | ||||| ||||||| ||||| || ||||||||| Sbjct 62126 ACGGTCCCATCATACTTGACCATAACTTCTTCCAAGGCCTTGACCAATTTCCGCTGAATA 62185 Query 302605 TAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCA 302664 ||||| ||| | ||||| || || ||||| || ||||| | | |||| |||| || Sbjct 62186 TAACCTGTTTCGGCGGTTTTAACCGCAGTATCGATAAGACCCTCTCTACCAGCCATGGCG 62245 Query 302665 TGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACG 302723 |||||||| | ||| ||| ||| | || | || | ||| ||||||| || ||||| Sbjct 62246 TGGAAGAAAAACTCCGTCGG-CGTCAAACCACGAAGGTACGAGTTCTCAACAAAGCCACG 62304 Query 302724 CGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTA 302783 | ||| || |||| |||| ||| || |||||||| | || | || | | ||| | Sbjct 62305 AGACTCTGGGGAATAGTCGTCCTTCGTGAAGTGTGGTAAAGTGCGGTATTTGAACCCGAA 62364 Query 302784 TGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || ||||| || || || ||| || || | | | |||||||||| || || Sbjct 62365 AGGAATTCGCTTGCCCTCCACCGACTGTTGCCCGACTACTGCAGTCATCTGCGAGATGTT 62424 >seq114 Length=402525 Score = 96.9 bits (106), Expect = 1e-14 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | || || | ||||||| | ||| |||||| ||||| | || || Sbjct 166788 ATCAGTCCACAGTCATCGCAGATGTGGACGCGGAAAGGATCAGAAACGTCAAACAGACGC 166729 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 | || |||| | || ||||| | |||||||| || || ||||| || |||||| Sbjct 166728 TCTTTCAAGAAGGCACTGGCTCCGTGAGCGATCATACAGTCGCGTTCCATCTCTCCGAAA 166669 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574 || |||||||||||||| || ||||| || | ||||| ||||| ||| Sbjct 166668 CGCAGACCACCATCGCGGGCTCTACCTTCCACTGGCTGTCGAGTCAGA 166621 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || |||||||| ||||| || || || |||||||| | |||||| |||| Sbjct 166356 TGAGCAATGGTCATACGTGACGGAATGGCGTGTGGGTTGATGATCAAGTCGGGAGTCAGA 166297 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || || ||||||||||||| | | | || || | |||||||| ||||| || Sbjct 166296 CCCTCCCGTGTAAAGGGCATATCCTCCTGC-CGGTACGTGATACCAATAGTACCCTTCTG 166238 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||| ||| |||||| |||||||| Sbjct 166237 CCCGTGACGGGAAGCGAACTTGTCACCAAT 166208 >seq4 Length=852194 Score = 89.7 bits (98), Expect = 2e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 354023 CACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCT 354082 |||| || ||||||||||| ||||| ||||| ||||||||||||| || | ||||| | Sbjct 355574 CACCCAGGGAGTCACGGTCCAGGAAGTTAGTCGGTTCGTCAAGGACCAGCAGATGCGGGT 355515 Query 354083 CCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 ||||||| || | || || || ||||| ||||||||||| || || || Sbjct 355514 TATTCCACATAGCACCCGCGAGGACAACCTTGACCTTCTGTCCTCCAGAAAG 355463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812187850719