Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq228 95.1 1e-13 seq117 89.7 6e-12 >seq228 Length=430945 Score = 95.1 bits (104), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 |||||||| || ||||| ||||| || || || ||||| || | || || |||||| Sbjct 330074 GACAGCATTGGAGGCACAGTGACTTGTGTTATCCGAAACGTCCCCGTTGGACTGGGCGAG 330015 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| || ||| | |||||| ||| || || || |||||| ||||| || ||| Sbjct 330014 CCTTGCTTCGATAAGCTGGAGGCCAAGCTGGCGCATGCAATGCTGAGCATCCCCGCGACC 329955 Query 19167 AAGGGATTCGAGATTGG 19183 ||||||||||| || || Sbjct 329954 AAGGGATTCGAAATCGG 329938 >seq117 Length=965375 Score = 89.7 bits (98), Expect = 6e-12 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| |||||| |||||| |||||||| || || | || ||||| Sbjct 187904 GCCTTCTGGTAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTTTTACCAGCCAGGGAGATG 187963 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||| | ||| ||||||| | ||||||| ||| | || |||| | Sbjct 187964 TTGTCCATGAAGTCGAATGGGTTGGTGGAGTTGTAGTACTTGCTGTTGCCAAGCGCAACC 188023 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || | || || ||||||||||| ||||||||||| || || |||||||||| Sbjct 188024 AGGAGTCTATCAGCAACAAACTCGATATACTGGCACATAAGATTGGAATTCATGCCGAGA 188083 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || || | || | | || || ||||| || |||| || || |||| Sbjct 188084 AGGGCAACTGGGAGGGCATCCGTTAGGAATTCCTTCTCAATTGCGACAGCTTCAGTGATG 188143 Query 868931 AT 868932 || Sbjct 188144 AT 188145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107115647435979