Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq89 129 5e-25 >seq89 Length=200026 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || ||||| || |||||||| ||| || || Sbjct 23372 ATGCAGATCTTTGTGAAGACCCTTACGGGAAAGACTATCACACTCGAAGTCGAATCCTCC 23313 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| ||||| ||| ||||| || || ||||| || || || || Sbjct 23312 GACACCATCGACAACGTTAAGACAAA-GATTCAAGATAAGGAGGGAATTCCCCCTGACCA 23254 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| | ||||| || || || ||||| |||||| | | | |||| || || || Sbjct 23253 GCAACGCCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTGTCTGACTACAA 23194 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || || ||| | || | ||| | || || || Sbjct 23193 TATCCAAAAGGAATCTACCCTTCACCTTGTTCTCCGACTTCGTGGTGG 23146 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACA 24786 || || || || || || || || || || || ||||||| | || |||| ||| ||| Sbjct 23869 ACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCCGACACCATCGACAACGTTAAGACA 23810 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 || ||| |||||||| ||||| || ||||||||||| || |||||||||||||| || || Sbjct 23809 AA-GATTCAAGACAAGGAAGGCATTCCTCCCGATCAGCAGCGTTTGATCTTTGCTGGCAA 23751 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||||||||| | | | | || || || || || || |||||||| || || || Sbjct 23750 GCAGCTGGAGGACGGTCGTACCCTCTCCGACTACAATATCCAGAAGGAATCTACTCTCCA 23691 Query 24907 CTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| | || |||| || || Sbjct 23690 CTTGGTTCTCCGTCTGCGTGGCGG 23667 Score = 100 bits (110), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| |||||| | || Sbjct 23144 ATGCAGATCTTCGTGAAGACCCTTACGGGAAAGACCATCACACTCGAGGTAGAATCTTCC 23085 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || || ||||||||| ||||| |||||||| ||||| ||||| Sbjct 23084 GATACTATTGATAACGTGAAGAC-AAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCA 23026 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || ||| | || || || || || ||||| |||||| Sbjct 23025 GCAGCGTCTCATTTTCGCGGGAAAGCAGCTTGAGGAT 22989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || ||||| || ||||| || || | | |||||| | || | Sbjct 23585 AAGACCCTCACTGGCAAGACTATCACCCTCGAGGTTGAGTCTAGCGACACTATCGACAAT 23526 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||||||| || || || || || || || || || || ||||||||||| Sbjct 23525 GTCAAGACAAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAGCAGCGTTTGATCTTC 23466 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||||| ||||| | | | |||| || || |||||||| ||||| || Sbjct 23465 GCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCC 23406 Query 24899 ACACTACACTTGGTGTTGCG 24918 || || || | || ||||| Sbjct 23405 ACCCTCCATCTCGTCTTGCG 23386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895985992360