Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq117 104 4e-16 >seq117 Length=965375 Score = 104 bits (114), Expect = 4e-16 Identities = 127/171 (74%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 796189 AGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAG 796248 ||||||||| |||||| || ||| |||||||| || ||||||||||| ||| ||| Sbjct 188646 AGGTTCTCATTCACGATCCCATCGGAAGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAG 188705 Query 796249 TGACGCTCGTCGTCGCTGA-GCGA--GACCCAGTGGACCGTGTCGGCGCCGAGGTCGACC 796305 | ||||||||| ||| | | |||| | ||||| | ||| | | ||||| Sbjct 188706 TAACGCTCGTCATCGTTCAGGCGATTGTGCCAGTCGTGAAGGTCTTTGGACAAGTCGATT 188765 Query 796306 TCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||| || ||||| ||||||||||||||||| |||||||| | ||| ||| Sbjct 188766 TCCTCAGCTGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCCAGATC 188816 Score = 96.9 bits (106), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643 || ||||||| ||||||||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct 188520 GGCTCCTTGATGTAGGTGTCGATGAGCAGAGAGTACGTCTCAGAGTGGATGTTCTCGATC 188579 Query 794644 GCGATCTGGAAGCCATAAAAGCA 794666 ||||||||| ||||| ||||| Sbjct 188580 ATGATCTGGAAACCATAGAAGCA 188602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916215870500993