Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq89 96.9 3e-15 >seq89 Length=200026 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| || | ||| || ||||| || || |||||||| || || | | |||||| Sbjct 23385 ACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCC 23444 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || ||||| | ||||| | ||||| ||||| ||||||||||| || Sbjct 23445 GTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTT 23504 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || || ||||| |||||| | || | |||||| | || || || || || | Sbjct 23505 ATCCTG-GATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCAACCTCGAGGGTGA 23563 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAAC 29774 |||| |||||||| | ||| || || Sbjct 23564 TAGTCTTGCCAGTGAGGGTCTTGAC 23588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217852575467