Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq171 104 2e-16 seq58 89.7 4e-12 >seq171 Length=700151 Score = 104 bits (114), Expect = 2e-16 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || ||||| ||||| || | ||| || || || ||||| |||| | | | |||||| Sbjct 95654 TTGTCAAGTCCATATGCGATAGCGGCGGCGGTAGGTTCGTTAACGACACGAAGGACATTA 95595 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||| || || | || ||||| || ||||| ||||| || | ||||| ||||| ||| Sbjct 95594 AGACCGGCGATAGTACCGGCATCCTTGGTGGCCTGTCTCTGGGCGTCGTTGAAATAGGCA 95535 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAA 282491 ||||| |||| |||||||| || || ||| |||||| Sbjct 95534 GGAACGGTAACAACGGCATGAGTAACGTCTCTTCCAA 95498 >seq58 Length=707594 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || ||||| || || | |||||||||||| || || || | || | | || ||| Sbjct 368796 TTCTCCAGACCGTAGGCGAGAGCAGCAGCAGTAGGCTCGTTGACAACACGGAGGACGTTA 368737 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 |||||||| || || ||||| || || || || | || || ||||| || |||||| Sbjct 368736 AGACCAGCGATCTGGCCAGCATCCTTGGTTGCCTGACGCTGGGAGTCGTTGAAGTATGCA 368677 Query 282455 GGAACAGTAATAACGGCAT 282473 |||||||||| |||||||| Sbjct 368676 GGAACAGTAACAACGGCAT 368658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740616309512862