Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq89 140 6e-28 >seq89 Length=200026 Score = 140 bits (154), Expect = 6e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| ||||| ||||||||||| ||||| ||||| || || | Sbjct 23665 TACCGCCACGCAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGG 23724 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||| || || || || ||||||||||| | | || ||||| |||| Sbjct 23725 AGAGGGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAG 23784 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||||| || || || || || || || | || | Sbjct 23785 GAATGCCTTCCTTGTCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAA 23844 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCA 82788 | |||| ||| || |||||||| |||| Sbjct 23845 CCTCCAGAGTGATGGTCTTGCCAGTCA 23871 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || |||||||| || || ||||| || ||||| || | | || Sbjct 23158 CGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGACAGGGTACGGCCA 23217 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || |||||||| ||||| || | ||| || || || || ||||| |||||| Sbjct 23218 TCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCCCTCCTTA 23277 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||||| || || || || || || || | ||| ||||| | || || Sbjct 23278 TCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGATTCGACTTCGAGTGTGATA 23337 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| ||||| |||||||| Sbjct 23338 GTCTTTCCCGTAAGGGTCTTCACAAAGATCTGCAT 23372 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 |||||||| || || || ||||| ||| | | ||| || || || || ||||| || || Sbjct 22954 TCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCCTCAAGCTGCTTTCCCGCGAAA 23013 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | || ||||||||||| ||||||||||| || || ||||||| || || || Sbjct 23014 ATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGTCTTCACGTTA 23073 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 ||||| ||||| || |||||| || | || || ||||| || || | ||||| || Sbjct 23074 TCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTCTTTCCCGTAAGGGTCTTCACG 23133 Query 82800 AATATCTGCATT 82811 || ||||||||| Sbjct 23134 AAGATCTGCATT 23145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823589637293