Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq117 149 6e-31 seq89 118 1e-21 seq91 105 6e-18 seq238 98.7 1e-15 >seq117 Length=965375 Score = 149 bits (164), Expect = 6e-31 Identities = 309/452 (68%), Gaps = 15/452 (3%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||||| ||||| ||||| || ||||| ||||| || ||| || ||||||| Sbjct 187909 CTGGTAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTTTTACCAGCCAGGGAGATGTTGTC 187968 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTG--GCCCAACTGTACGAGC 120468 ||| || ||||| |||||| | | ||| |||| || |||| ||| | | || || Sbjct 187969 CATGAAGTCGAATGGGTTGGTGGAGTTGTAGTACTT--GCTGTTGCCAAGCGCAACCAGG 188026 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAA 120527 |||| || || |||||||| || |||| |||||| || || | |||||||| || | Sbjct 188027 AGTCTATCAGCAACAAACTCGATATACTGGCACATAAGATTG-GAATTCATGCCGAGAAG 188085 Query 120528 CGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACAT 120587 || || || | || ||| | || ||||||||||| | || || || ||| || Sbjct 188086 GGCAACTGGGAGGGCATCCGTTAGGAATTCCTTCTCAATTGCGACAGCTTCAGTGATGAT 188145 Query 120588 GGCGAGCATA--GTG-TGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCA 120644 | | ||| | || | || ||| |||| | |||| | | | ||||||| Sbjct 188146 GTCCTGCACAACCTGCTTGCTGGGGCGGTTGT-TGAGATGAG-----AGAACAACAGGCA 188199 Query 120645 CGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCC 120704 || ||||||||||| || || || ||||| || |||||||||||| || || || || Sbjct 188200 AGCGAAGTCCGTGTGAAGACCTTCATCGCGAGAAATCAGCTCGTTGGAGAAAGTAAGACC 188259 Query 120705 GGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACAC 120764 ||||| | ||| | |||| | |||| |||| |||||| || || ||||| | Sbjct 188260 AGGCATCAAGCCACGCTTCTTCAACCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGAT 188319 Query 120765 GCCCTCCACGATGGCAAAGGCGACCATGCGCT 120796 ||| || || ||| |||||||| | |||| Sbjct 188320 GCCTTCAACAGCGGCGAAGGCGACAAGACGCT 188351 >seq89 Length=200026 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| ||||||||| || ||||| || || || ||| | ||||| |||||||| | Sbjct 22947 GGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCA-TCCTCAAGCTGCTTTC 23005 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||||| ||||||| |||||||| || ||||| || ||||||||||| ||||||| || Sbjct 23006 CCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGTCT 23065 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| || |||| | || || |||| |||| ||| || || || || | Sbjct 23066 TCACGTTATCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTCTTTCCCGTAAGGG 23125 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 23126 TCTTCACGAAGATCTGCAT 23144 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| ||| || ||| |||||| ||||| Sbjct 23397 ATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTG 23456 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || | ||||||||||| || || || || ||||| || |||||| Sbjct 23457 CTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTT 23516 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | ||||| | || | |||||| | | ||| || |||| ||||| || ||||| || Sbjct 23517 TGTCTTGACATTGTCGATAGTGTCGCTAGACTCAACCTCGAGGGTGATAGTCTTGCCAGT 23576 Query 133637 CAGAGTTTTTACGA 133650 || || || |||| Sbjct 23577 GAGGGTCTTGACGA 23590 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || || ||||| |||||||| ||| | || |||| |||||| |||||||||| Sbjct 23697 GTAGATTCCTTCTGGATATTGTAGTCGGAGAGGGT--ACGACCGTCCTCCAGCTGCTTGC 23754 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | |||||||| |||||||| |||||||||||||| |||||| || Sbjct 23755 CAGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGAATCTTTGTCT 23814 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | | || | ||||||| || ||| || || | |||| ||| ||||| |||| Sbjct 23815 TAACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGTCA 23871 >seq91 Length=644249 Score = 105 bits (116), Expect = 6e-18 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| |||| || || | | | |||||||||||||| || || | || Sbjct 240257 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCA-TCCTCGAGCTGCTTACCAGCAAAGAT 240199 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 || ||||||||||| || |||||||| |||||||| ||||||| ||||| | || Sbjct 240198 AAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTC 240139 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | |||||| | | ||| ||||||| ||| | || || || ||||| || || ||||| Sbjct 240138 GATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACGAA 240079 >seq238 Length=427615 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| | ||| ||||||||||||||||||| Sbjct 50074 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 50015 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | || || ||||||||||||||||||||||| |||||||| Sbjct 50014 GCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 49971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419065727880