Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq219 120 7e-22 >seq219 Length=270999 Score = 120 bits (132), Expect = 7e-22 Identities = 440/685 (64%), Gaps = 7/685 (1%) Strand=Plus/Plus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 || |||||||| |||||||| ||| | || | || || ||||||| || | || Sbjct 153519 TTCGGTTTCAAGACTCTTGAGCGTTCATACCTGCTACGGATCAATGGGAAGGTGGCAGAG 153578 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCT 110426 ||||| || |||||| | | || ||||| |||| || || || | |||||| || Sbjct 153579 CGTCCCCAGCACATGCTGATGCGGGTTGCTGTTGGAATACACGGCAACGATATTGAAAGG 153638 Query 110427 GTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTA 110486 | ||||| ||| | | | | | ||| | || ||||| | || || || Sbjct 153639 GCCATTGAGACATATAACTTGATGTCTCAGAAGTACTTTACCCATGCCTCGCCGACTCTG 153698 Query 110487 TTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGAT 110546 || || || || ||| | || |||| || || || || | | || | | Sbjct 153699 TTCAATGCCGGCACTCCCCAGGCTCAGCTGGCCTCATGTTTCCTGGTCGATATGAGAGCA 153758 Query 110547 GATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTC--TTATTTCTAAAAACT 110604 ||| || |||||||| |||||| | ||| |||| |||| | | ||||| || | Sbjct 153759 GATAGCATCGAAGGTATCTATGATAC-CTTGAAGAC-CTGCGCGATGATTTCCAAGACTG 153816 Query 110605 CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAG 110664 | || || |||||| | |||| || || || | | || | | || || | Sbjct 153817 CAGGCGGTATTGGTCTCAACGTCCACCGAATCCGTGCCACGGGCTCTTACATTGCCGGAA 153876 Query 110665 CGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAAT 110724 | || || |||| | |||| | || || ||| | | || |||||| | ||||| | || Sbjct 153877 CCAACGGCTCTTCTAATGGAATCGTCCCTATGCTCCGTGTATTCAACAATACTGCGAGAT 153936 Query 110725 ATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGC 110781 | ||| |||| ||||| || | | || | ||||||||||| || |||||||||| Sbjct 153937 ACGTGGATCAGGGTGGAAACAAGCGGCCGGGTGCTTTTGCTATCTACCTGGAACCTTGGC 153996 Query 110782 ATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAG 110841 | | ||| | || |||||||| || || || ||||| || ||| || || |||| Sbjct 153997 ACGCTGATGTTTTCGAATTCTTGGATCTCCGCAAAAACCATGGAAAGGAGGAGGTCAGAG 154056 Query 110842 CACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAA 110901 | ||||| | || || || | |||| ||||| | || ||||| || ||| | | | Sbjct 154057 CTCGTGACCTTTTCTACGCTCTTTGGACCCCAGATCTGTTTATGAAGCGGGTTGAGGCTA 154116 Query 110902 ATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAA 110961 | || ||| | ||| | || || || | ||||| || ||||||| ||||| Sbjct 154117 ACGGTGACTGGACACTTTTCTGCCCGAATGAGGCACCTGGCCTGGCTGATGTCTATGGTG 154176 Query 110962 AAGAGTTTGAAGACCTTTACGAAAA 110986 | |||||||| | || |||||||| Sbjct 154177 ACGAGTTTGACGCTCTCTACGAAAA 154201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186808435866807