Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq89 93.3 3e-14 >seq89 Length=200026 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| | ||||| || ||||| || || || || ||||| ||||| Sbjct 23666 ACCGCCACGCAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGA 23725 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| |||| || || || ||||| ||||||||||||||||| | || Sbjct 23726 GAGGGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGG 23785 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||| | ||| | ||| | ||||||| || || | Sbjct 23786 AATGCCTTCCTTGTCTTGAATCTT-TGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAA 23844 Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725 | || | ||||| || || || || Sbjct 23845 CCTCCAGAGTGATGGTCTTGCCAGT 23869 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||||||||||| || |||||||| || || || || || | || || | || Sbjct 22942 TGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCCTCAAGCTGC 23001 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| || ||||| | ||||||||||||| | || | ||||| ||||| || || Sbjct 23002 TTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTT- 23060 Query 33667 TGT-TTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| |||| || | || ||| ||||| || || | ||||| || || || || Sbjct 23061 TGTCTTCACGTTATCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTCTTTCCCGT 23120 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 23121 AAGGGTCTTCACGAAGATCTGCAT 23144 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || || | ||| || ||| ||| || || |||||||| ||||| Sbjct 23373 ACCACCACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 23432 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | || || || || || |||||||||||||| || | || Sbjct 23433 CAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGG 23492 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || || || || || ||| | |||| ||| | |||||||| || || | Sbjct 23493 AATACCCTCCTTATCCTGGATCTT-TGTCTTGACATTGTCGATAGTGTCGCTAGACTCAA 23551 Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725 | || | ||||| || || || || Sbjct 23552 CCTCGAGGGTGATAGTCTTGCCAGT 23576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702850255040