Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq89 123 6e-23 >seq89 Length=200026 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || ||||| || ||||| | ||||| ||| || ||| Sbjct 23369 CAGATCTTTGTGAAGACCCTTACGGGAAAGACTATCACACTCGAAGTCGAATCCTCCGAC 23310 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||||||| || || |||||| || ||| ||| Sbjct 23309 ACCATCGACAACGTTAAGACAAAGATTCAAGATAAGGAGGGAATTCCCCCTGACCAGCAA 23250 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| ||||||||| | || ||||| | || || | || ||||| || Sbjct 23249 CGCCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTGTCTGACTACAATATC 23190 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| |||||||||||| | ||||||| Sbjct 23189 CAAAAGGAATCTACCCTTCACCTTGTTCTCCGACTTCG 23152 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| | |||||||||||| ||||| || || |||| ||| ||||||| || || Sbjct 23152 CGAAGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGACAGGGTA 23211 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||| || ||||||||||| ||||||||||| ||||| || Sbjct 23212 CGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTG 23255 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||| | || || ||| ||| || || | || Sbjct 23129 AAGACCCTTACGGGAAAGACCATCACACTCGAGGTAGAATCTTCCGATACTATTGATAAC 23070 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || ||||||||| || || || | || || ||| Sbjct 23069 GTGAAGACAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAGCAGCGTCTCATTTTC 23010 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||| | || ||||| | ||| || | || |||||| ||||||||||| Sbjct 23009 GCGGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCTGACTACAACATCCAGAAAGAGAGC 22950 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 22949 ACCCTTCACCTCGT 22936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816454223327