Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq117 174 2e-37 seq219 96.9 5e-14 >seq117 Length=965375 Score = 174 bits (192), Expect = 2e-37 Identities = 221/299 (74%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||||||||| ||||| || ||||| ||||| Sbjct 188816 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACAGCTGAGGAAATCGACT 188758 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTG--TCGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | ||| | ||||| |||| ||| ||| |||||||| | |||||| Sbjct 188757 TGTCCAAAGACCTTCACGACTGGCACAATCGCCTGAACGATGACGAGCGTTACTTCATCT 188698 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||| ||| |||||||| |||||| |||||| |||||||| | | Sbjct 188697 CCCACGTCCTCGC-TTTCTTCGCCGCTTCCGATGGGATCGTGAATGAGAACCTTGTGGAA 188639 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || |||| |||||||| | || || || |||| || || || ||||||||| Sbjct 188638 CGTTTTAGTGGCGAGGTCCAGATTCCTGAAGCGCGTTGCTTCTATGGTTTCCAGATCATG 188579 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 ||||| |||||||||||||| || ||||| || || |||||||||||| ||||||| || Sbjct 188578 ATCGAGAACATCCACTCTGAGACGTACTCTCTGCTCATCGACACCTACATCAAGGAGCC 188520 >seq219 Length=270999 Score = 96.9 bits (106), Expect = 5e-14 Identities = 194/288 (67%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 ||||| ||| ||| || ||| || |||| || || || ||||||||||| || | Sbjct 153660 ATGTCTCAGAAGTACTTTACCCATGCCTCGCCGACTCTGTTCAATGCCGGCACTCCCCAG 153719 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 | ||| | || || || ||| | || |||| || ||| ||||| || |||||| Sbjct 153720 GCTCAGCTGGCCTCATGTTTCCTGGTCGATATGAGAGCAGATAGCATCGAAGGTATCTAT 153779 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 || || | ||| |||||| | || |||||| | || ||||| || ||| | || Sbjct 153780 GATACCTTGAAGACCTGCGCGATGATTTCCAAGACTGCAGGCGGTATTGGTCTCAACGTC 153839 Query 260075 CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTT 260134 ||| | || ||| ||||| | ||| | || || ||||||||| || || || | Sbjct 153840 CACCGAATCCGTGCCACGGGCTCTTACATTGCCGGAACCAACGGCTCTTCTAATGGAATC 153899 Query 260135 GTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || ||||| || || || ||| | || ||| | ||||| || ||| Sbjct 153900 GTCCCTATGCTCCGTGTATTCAACAATACTGCGAGATACGTGGATCAG 153947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177783518322494