Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq89 123 2e-23 seq91 109 5e-19 seq238 84.2 2e-11 >seq89 Length=200026 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| || | ||| | || |||||| ||||||||||| |||| | Sbjct 23374 CCACCACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 23433 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || ||||||||||| || || ||||| ||||||||||||| ||| Sbjct 23434 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGA 23493 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||| ||| ||||||| ||| | | | | | |||||||| || || ||| Sbjct 23494 ATACCCTCCTTATCCTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCAACC 23553 Query 35690 TCCACCGTGATCGTTTTACCCGT 35712 || | ||||| || || || || Sbjct 23554 TCGAGGGTGATAGTCTTGCCAGT 23576 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||||||||| | || | || | || | || ||||| || || |||||||| || Sbjct 22915 TTTCCACCACGGAGCCGAAGGACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCA 22974 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | || || || | || || |||||||| ||||| || || | |||||||| || | | Sbjct 22975 GACAGAGTACGACCATCCTCAAGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGA 23034 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 |||| | ||||||||| ||||||| ||||| | | | || ||| ||||| Sbjct 23035 GGAATTCCTTCCTTGTCCTGGATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCT 23094 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| | ||||| || || ||||| | || ||||| || |||||||||| Sbjct 23095 ACCTCGAGTGTGATGGTCTTTCCCGTAAGGGTCTTCACGAAGATCTGCATTC 23146 Score = 98.7 bits (108), Expect = 9e-16 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||| || || ||||| |||| | ||| || |||| ||| Sbjct 23685 ACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCGTCCTCC 23744 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| ||||| |||||||| || | ||||| || |||||||| Sbjct 23745 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGA 23804 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | |||| | | |||||| || || ||||||| ||||| || || Sbjct 23805 ATCTTTGTCTT-AACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGATGGTCTT 23863 Query 35707 ACCCGTCA 35714 || |||| Sbjct 23864 GCCAGTCA 23871 >seq91 Length=644249 Score = 109 bits (120), Expect = 5e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| ||| || || || | || || ||||||||||| ||||| | Sbjct 240259 CCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGA 240200 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 | | ||||||||||||| || | || |||||||||| ||||||| ||| | |||| Sbjct 240199 TAAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGAC-GTTG 240141 Query 35667 CC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||||||||| || || || | || || || |||||||||| || ||||| Sbjct 240140 TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACG 240081 Query 35726 AA 35727 || Sbjct 240080 AA 240079 >seq238 Length=427615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || |||| || |||||||| ||||| || Sbjct 50069 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 50010 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| ||||||||||| | ||| | || ||||||||| Sbjct 50009 GATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 49971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791982777960