Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq219 179 5e-40 seq117 120 4e-22 >seq219 Length=270999 Score = 179 bits (198), Expect = 5e-40 Identities = 590/907 (65%), Gaps = 10/907 (1%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || || || || || | |||||| ||| ||||| ||||| || || | | || | Sbjct 154186 TCAAACTCGTCACCATAGACATCAGCCAGGCCAGGTGCCTCATTCGGGCAGAAAAGTGTC 154127 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGC-TATAAA 69635 || || | | | ||| ||| || |||||||| ||||| || |||||||||| || ||| Sbjct 154126 CAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGGTCCAAAGAGCGTAGAAA 154067 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 || || | | ||| || || ||||| ||||| ||||| | || || | Sbjct 154066 -AGGTCACGAGCTCTGACCTCCTCCTTTCCATGGTTTTTGCGGAGATCCAAGAATTCGAA 154008 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 || ||||| ||||| ||||| || || || || | | ||||| || || ||||| || Sbjct 154007 AACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCCGGCCGCTTGTTTCCACC 153948 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 |||||| | |||||| ||||| || || | || | ||||| || | || |||||||| Sbjct 153947 CTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGCATAGGGACGATTCCATTAGA 153888 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT-AGAC 69874 || || ||||| | ||| ||| || | || || || | | | | |||| Sbjct 153887 AGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGGAT-TCGGTGGACGTTGAGAC 153829 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 | || || ||||| | || || || | || || ||||| || ||||| ||||| | Sbjct 153828 CAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGGTCTTCAAGGTATCATAGATACCTT 153769 Query 69935 CTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTC 69994 | |||||||| || |||| | | || ||||| | || ||| || ||| | Sbjct 153768 CGATGCTATCTGCTCTCATATCGACCAGGAAACATGAGGCCAGCTGAGCCTGGGGAGTGC 153709 Query 69995 CCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATG 70054 | ||||| || | || || || || || || || | || | ||| | || || |||| Sbjct 153708 CGGCATTGAACAGAGTCGGCGAGGCATGGGTAAAGTACTTCTGAGACATCAAGTTATATG 153649 Query 70055 TTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 | ||||| || ||| ||||| || ||||| | || || ||||||| ||| | Sbjct 153648 TCTCAATGGCCCTTTCAATATCGTTGCCGTGTATTCCAACAGCAACCCGCATCAGCATGT 153589 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 |||| || || ||| || || ||| || | ||||||||| || ||||| | Sbjct 153588 GCTGGGGACGCTCTGCCACCTTCCCATTGATCCGTAGCAGGTATGAACGCTCAAGAGTCT 153529 Query 70175 TAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTAT 70234 | || || || | ||||| ||| || | ||||| | || | || || || | || Sbjct 153528 TGAAACCGAAGAAATTGTAGTTAAAATCGCGATCGTACACGATTGCGGAGTTAAGCTCAT 153469 Query 70235 CCTTATATTTGGTAACTATATCCATAACAGTAGGT-GAGATAATCGGAGATCGTTTACCA 70293 | || ||| ||||||| || ||| | | || || ||||| | | ||||| | Sbjct 153468 CGGCATGTTTCATAACTATTTC-ATATGTCTCCTTAGAAATCATCGGTGCTGGTTTATTA 153410 Query 70294 TTTTTAGGATTAACATAGTTGAATAAA--TCTTCCATTACATCACTAAATAGtttttttG 70351 || || || || ||||||| |||| | ||| || || | || | || || | Sbjct 153409 TTCTTTGGGTTGACATAGT--AATAGAGGTCTGAGATGACTAGAGAGAACTGCTTCTTGG 153352 Query 70352 TTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTT 70411 ||| |||||| | || |||| ||||| | || || ||||||||||| || || ||| Sbjct 153351 TTTGCTTGTGAAGGTTGGATACAGCTATCCGAGCAGCAAGAATAGCATAATCTGGGTGTG 153292 Query 70412 GTGTAGT 70418 |||||| Sbjct 153291 TTGTAGT 153285 >seq117 Length=965375 Score = 120 bits (132), Expect = 4e-22 Identities = 296/448 (66%), Gaps = 16/448 (4%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| || |||||||| |||||||| || || ||||| || ||| || || || Sbjct 187907 TTCTGGTAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTTTTACCAGCCAGGGAGATGTTG 187966 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||| || || || || || | || || | || | || | | | Sbjct 187967 TCCATGAAGTCGAATGGGTTGGTGGAGTTGTAGTACTTGCTGTTGCCAAGCGCAACCAGG 188026 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | |||||| |||||||| || || || ||| | | ||||||| || | || Sbjct 188027 AGTCTATCAGCAACAAACTCGATATACTGGCACATAAGATTGGAATTCATGCCGAGAAGG 188086 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 |||||| || || |||||||| || || || || || | || || || || || Sbjct 188087 GCAACTGGGAGGGCATCCGTTAGGAATTCCTTCTCAATTGCGACAGCTTCAGTGAT---- 188142 Query 39566 GATGTT----ACTACCTCATCACT----CGGTGGATGCAATAAATGTTTAAACATTAAGC 39617 ||||| || |||| | || |||| | || || | | |||| | || Sbjct 188143 GATGTCCTGCACAACCTGCTTGCTGGGGCGGTTGTTGAGATGAGAG----AACAACAGGC 188198 Query 39618 AGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTC 39677 | |||||||| || || || ||||| | | ||| | ||||| || || || || | Sbjct 188199 AAGCGAAGTCCGTGTGAAGACCTTCATCGCGAGAAATCAGCTCGTTGGAGAAAGTAAGAC 188258 Query 39678 CAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGA 39737 ||||||| | |||||||| || | ||| || |||| ||||| |||||||| ||||||| Sbjct 188259 CAGGCATCAAGCCACGCTTCTTCAACCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGA 188318 Query 39738 TGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||||| || || || || || ||||| Sbjct 188319 TGCCTTCAACAGCGGCGAAGGCGACAAG 188346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906335714680