Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq89 96.9 3e-15 seq91 82.4 6e-11 >seq89 Length=200026 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| ||||||||||| || | | || | || || ||||| || || Sbjct 23176 GTAGATTCCTTTTGGATATTGTAGTCAGACAGGGTACGGCCATCCTCAAGCTGCTTTCCA 23235 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || || || || || || || | ||||| ||||| ||||| | || Sbjct 23236 GCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCCCTCCTTATCTTGAATCTTTGTCTTA 23295 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||| ||||| || || |||| || ||||| || || Sbjct 23296 ACGTTGTCGATGGTGTCGGAGGATTCGACTTCGAGTGTGATAGTCTTTCCCGTAAGGGTC 23355 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 23356 TTCACAAAGATCTGCATA 23373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 ||||| || || |||||||| || | || | || || ||||| || || ||| || Sbjct 22954 TCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCCTCAAGCTGCTTTCCCGCGAAA 23013 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 ||||||||||| ||||| || || | || || || || |||||| | |||| | | Sbjct 23014 ATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGTCTTCACGTTA 23073 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||| || | | ||| || || || || || | || ||||| || || ||||| Sbjct 23074 TCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTCTTTCCCGTAAGGGTCTTCACG 23133 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 23134 AAGATCTGCAT 23144 >seq91 Length=644249 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 || || || ||||||||||||| | || | || |||||||| ||||| || | || Sbjct 240257 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATA 240198 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| || ||||| || | ||||| || || |||||| | || | | | || Sbjct 240197 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCG 240138 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | ||||| | | || || || || || |||| || |||||||| || ||||| ||| Sbjct 240137 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACGAAG 240078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932913659144