Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq117 134 2e-26 seq219 118 1e-21 seq221 86.0 8e-12 >seq117 Length=965375 Score = 134 bits (148), Expect = 2e-26 Identities = 306/455 (67%), Gaps = 14/455 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| ||||||||||||||||| || || || ||| | ||| || ||||| Sbjct 187913 TAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTTTTACCAGCCAGGGAGATGTTGTCCATG 187972 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || |||||||| | ||||| | | |||||| | ||| | ||||| | Sbjct 187973 AAGTCGAATGGGTTGGTGGAGTTGTAGTACTTGCTGTTGC--CAAGCGCAACCAGGAGTC 188030 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 ||| | || |||| || |||| |||| | ||| ||||| |||| ||| | Sbjct 188031 TATCAGCAACAAACTCGATATACTGGCACATAAGATTGGAATTCATGCCGAGAAGGGCAA 188090 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 |||||| || ||| | ||| |||||||||| | |||||||| | |||| | | Sbjct 188091 CTGGGAGGGCATCCGTTAGGAATTCCTTCTCAATTGCGACAGCTTCAGTGATGATGTCCT 188150 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCAAAC--- 130021 | | || | ||| || | ||| | | ||| ||| | || ||||| | Sbjct 188151 GCACAACCTGCTTGCTGGGGCGGTTGTTGAGA----TGA-GAGAACAACAGGCAAGCGAA 188205 Query 130022 -TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 ||| ||| ||||| || || || || || || || || ||||| ||||| ||||| Sbjct 188206 GTCCGTGTGAAGACCTTCATCGCGAGAAATCAGCTCGTTGGAGAAAGTAAGACCAGGCAT 188265 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 | || ||||||||||||||||| || | ||| || |||||||||||||| || || Sbjct 188266 CAAGCCACGCTTCTTCAACCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGATGCCTTC 188325 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||| ||||| || | ||||||| ||| |||| Sbjct 188326 AACAGCGGCGAAGGCGACAAGACGCTGAGCGAAGG 188360 >seq219 Length=270999 Score = 118 bits (130), Expect = 1e-21 Identities = 404/624 (65%), Gaps = 7/624 (1%) Strand=Plus/Minus Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 ||||| |||||| || |||||||| ||||| | | || | || || ||||||| || Sbjct 154203 ACTTTTCGTAGAGAGCGTCAAACTCGTCACCATAGACATCAGCCAGGCCAGGTGCCTCAT 154144 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 |||||||| || | ||| | ||| |||||||||||||||| || || |||||| Sbjct 154143 TCGGGCAGAAAAGTGTCCAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGG 154084 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118 |||| || || |||| || || ||| | | || || | || || || || | Sbjct 154083 TCCAAAGAGCGTAGAAAAGGTCACGAGCTCTGACCTCCTCCTTTCCATGGTTTTTGCGGA 154024 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 ||||| || || | | ||| |||||||| ||||||||||| | || | | ||| Sbjct 154023 GATCCAAGAATTCGAAAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCCG 153964 Query 119179 TACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTG 119235 || ||| |||| | || || |||||||| ||| |||||||| ||||| | Sbjct 153963 GCCGCTTGTTTCCACCCTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGCATAG 153904 Query 119236 GAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACAT 119295 | | ||| |||| || ||| || || || ||| ||| |||| | || Sbjct 153903 GGACGATTCCATTAGAAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGGATTC 153844 Query 119296 CGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGAC 119355 ||||| || | ||||||||| ||||| ||| || || |||||| | | | Sbjct 153843 GGTGGACGTTGAGACCAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGGTCTTCAAGG 153784 Query 119356 TGCCGTAGATCCCATCGAT-CGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 119414 | | ||||| || ||||| | | | || || | ||| ||||| || | || Sbjct 153783 TATCATAGATACCTTCGATGCTATCTGCTCTCATAT-CGACCAGGAAACATGAGGCCAGC 153725 Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TG 119473 |||| | ||| || || || ||||| ||||| || | || ||| | || ||| | || Sbjct 153724 TGAGCCTGGGGAGTGCCGGCATTGAACAGAGTCGGCGAGGCATGGGT-AAAGTACTTCTG 153666 Query 119474 GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 119533 |||||| || || ||||| | | | ||| || | ||||| || || | | Sbjct 153665 AGACATCAAGTTATATGTCTCAATGGCCCTTTCAATATCGTTGCCGTGTATTCCAACAGC 153606 Query 119534 GACCCGCATAAACATGTATTGGGG 119557 |||||||| | ||||| ||||| Sbjct 153605 AACCCGCATCAGCATGTGCTGGGG 153582 >seq221 Length=103995 Score = 86.0 bits (94), Expect = 8e-12 Identities = 224/340 (66%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 179775 GAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATA 179834 ||||||||||||||| ||||||| |||| ||| ||||||||||| | ||||||| Sbjct 59492 GAGACCCTTAATGTGACTTCCATCGTGATCCTGATCGGTCATAATCATCAAGTGACCATA 59433 Query 179835 GCGAAGCTCGGAAACATCTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAG 179894 || || || ||| ||| ||||| ||||||||||| | | ||||||| Sbjct 59432 TCGGAGGCCGCGCGTATCGGTATATTCCTTCTTATGTTGAAGACCAAGAAAGTTCTTGAT 59373 Query 179895 ATCATTGAACTCTTGGTTT---GATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTT 179951 || | || |||||| ||| ||| | |||| | || ||||| |||||||| Sbjct 59372 ATTCTGGATCTCTTGATTTTGCGATATCTGTTG---AAACGAGGCATCACGGACATTGAG 59316 Query 179952 ACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGC 180011 | ||| || || || ||||| ||||| | |||| | || || || | | || || Sbjct 59315 AAGCTTTCCTCGCAGGGGGAAGACACCAAACAGATCCGGTCCGACAACTGCTCGTCCTGC 59256 Query 180012 AACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACT----TTCCAG 180067 | || | | || || |||||||| || || | || || || || | | || Sbjct 59255 CATGGCCAAGCCTTTAGCTGAATCACCTTCGGTAAGAATCAGTGTGCAGTGATGTCCCTC 59196 Query 180068 ATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGG 180107 ||| || ||||||||||| || ||| || |||||| Sbjct 59195 CTTG----GTTCCTGCCTTGTTTGCATCGGTCAGCTTGGG 59160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432981363720