Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq117 105 8e-18 >seq117 Length=965375 Score = 105 bits (116), Expect = 8e-18 Identities = 302/457 (66%), Gaps = 18/457 (4%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| ||| |||| || |||| || || |||||| || |||||||||||||| |||| Sbjct 188360 CCTTCGCTCAGCGTCTTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGATCCT 188301 Query 94856 TCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| | || | ||| | |||||||| || | ||||| ||||| ||||||||| Sbjct 188300 T-TGCATCCATCTTCTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTTACTTTCTCCAAC 188242 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTA 94974 ||||| || ||||| || || || || ||| || || || || || || || Sbjct 188241 GAGCTGATTTCTCGCGATGAAGGTCTTCACACGGACTTCGC-TTG--CCTGTT---GTTC 188188 Query 94975 TTGCGTATTAA------ACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTT 95028 | | | | || || | | || | | || || | | ||||| || Sbjct 188187 TCTCATCTCAACAACCGCCCCAGCAAGCAGGTTGTGCAGGACATCATCACTGAAGCTGTC 188128 Query 95029 GAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCT 95088 | |||||||| | |||| || ||||||||| ||| || || |||| |||||||| Sbjct 188127 GCAATTGAGAAGGAATTCCTAACGGATGCCCTCCCAGTTGCCCTTCTCGGCATGAATTCC 188068 Query 95089 GAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTG 95148 | |||| | ||||| |||| ||| |||||||| | || | | | || Sbjct 188067 AATCTTATGTGCCAGTATATCGAGTTTGTTGCTGATAGACTCCTG--GTTGCGCTTGGCA 188010 Query 95149 CCTCCAATT--TGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACG 95206 | ||| | | ||||||| || ||||| ||||||||||| ||||| ||| | | Sbjct 188009 ACAGCAAGTACTACAACTCCACCAACCCATTCGACTTCATGGACAACATCTCCCTGGCTG 187950 Query 95207 GGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243 | || || ||||||||||| ||| | ||||| ||||| Sbjct 187949 GTAAAACCAACTTCTTCGAGAAGCGCGTTGGCGACTA 187913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258707551880