Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq122 228 2e-54 seq89 150 5e-31 seq51 114 4e-20 seq265 111 5e-19 >seq122 Length=243171 Score = 228 bits (252), Expect = 2e-54 Identities = 945/1479 (64%), Gaps = 25/1479 (2%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| | ||||| ||| | || || || || || ||||| | | | | | |||| | Sbjct 203302 CCGCAGTCGGAATTGATCTGGGAACGACCTACTCCTGTGTCGGTTTCTTCAGAGATGACC 203243 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | || || || || ||||| || |||||| | || || || || | ||||||||| | Sbjct 203242 GCATTGAGATCATCGCCAATGACCAGGGTAACCGCACCACTCCTTCCTTCGTTGCATTCA 203183 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| || |||||| |||| |||||| | || | || || | || || || | | Sbjct 203182 CCGACACCGAGCGTTTGATCGGTGATGCCGCCAGGAACCAGGTCGCCATGAACCCCCACA 203123 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACA 349432 | || || || || || ||||| || || ||| | ||||| | ||| | || Sbjct 203122 ACACCGTCTTCGACGCCAAGCGTCTCATCGGTCGTCGTTTTGCGGACGCCGAGGTC---- 203067 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || ||||| | || || | || || | || || | | ||| |||| || || || Sbjct 203066 CAGTCTGACATGAAGCACTGGCCCTTCAAGGTCGT-CGACAAG--GGTGGCAAGCCCATC 203010 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 || ||||| || | || || || || || || ||||| ||||| || || ||| Sbjct 203009 ATCGAGGTCGAGTTCAAGGGCGAGACCAAGCAGTTCACCCCCGAGGAAATCTCCTCTATG 202950 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612 || | | || ||| || | ||| || | || | |||| || || | | ||| Sbjct 202949 GTCCTGATCAAGATGCGTGAGACTGCCGAGTCCTACCTCGGTGGCACTGTCAACAACGCT 202890 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || |||||||| || ||||| || || || |||||||| || || || || || || Sbjct 202889 GTCATTACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGACGCCGGT 202830 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 ||||| || | || || || | || || || || || || || || || || || Sbjct 202829 CTTATTGCTGGTCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCCGCTGCCATCGCC 202770 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || ||||| || | | | || || || | || || || || || |||||| Sbjct 202769 TACGGTCTTGACAAGAAGGGCGAGGGTGAGCGCAACGTCCTGATCTTCGACTTGGGTGGT 202710 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 |||||||| ||||| || || || || |||| ||||| || || ||||| ||| | || Sbjct 202709 GGTACTTTCGATGTCTCCCTCCTGACCATTGAGGAGGGTATCTTCGAAGTCAAATCCACC 202650 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 |||||||| || || | ||||| || || || || || || ||||| || || || Sbjct 202649 GCTGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCGTC 202590 Query 349913 AAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGA-TAATCCTAGAGCAATGCGTC 349970 || || ||||| ||||| || | ||| || || || || | || | |||| Sbjct 202589 GCTGAGTTCAAGCG-CAAGCACAAGAAGGAT-CTGACGACCAACGCTCGTGCTCTCCGTC 202532 Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTA 350030 | || | ||| | || || ||||| |||||| || | || || | |||| ||||| | Sbjct 202531 GTCTCCGCACTTCCTGCGAGCGTGCCAAGCGTACCCTCTCTTCCGCCGCCCAGACCTCCA 202472 Query 350031 TTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGT 350090 | || ||||| ||||| ||| || | || |||| | || || || |||||||| | Sbjct 202471 TCGAGATTGACTCTCTCTTTGAGGGTATTGACTTCTACACCTCCATCACTCGTGCTCGTT 202412 Query 350091 TTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAA 350150 | || || | || ||| || || | | || ||||| || || || || | Sbjct 202411 TCGAGGAGCTGTGCCAGGACCTCTTCCGCTCCACCATGGAGCCCGTCGAGCGTGTCCTCC 202352 Query 350151 AAGATGCAAAAATGTCCAAAAATC--AGATTGATGAAGTAGTTTTAGTTGGTGGTTCTAC 350208 || || || ||| | || || || || || || || | || || |||||||| Sbjct 202351 GTGACGC--CAAGGTCGACAAGTCCTCCATCGACGATGTCGTCCTTGTCGGCGGTTCTAC 202294 Query 350209 ACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAG 350268 ||||| || || || || | | | | || || || || ||| || || | Sbjct 202293 TCGTATCCCCAAGGTCCAGCGTCTTGTTGCCGACTTCTTCAA---CAAGGAGCCCAACAA 202237 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 || || || || ||||| || ||||| || |||||||| || ||||| |||| || || Sbjct 202236 GTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCTGCCGTCCAGGCTGCTATCTTGTC 202177 Query 350329 TGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTTTC 350385 || | | || || || | | || | | || || || || |||| || || Sbjct 202176 CGGTGACACCAGCTCCAAGACCACCAACGAGATCCTCCTGCTCGACGTCGCTCCCCTCTC 202117 Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGT 350445 | || | || || |||||| || |||||| ||| || | || | ||| | Sbjct 202116 TATCGGTATTGAGACCGCTGGTGGTGTCATGACTCCTCTGATCAAGCGCAACACTACCAT 202057 Query 350446 ACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAAT 350505 || || || |||||| | || || || || | | || || ||||| | || || Sbjct 202056 CCCCACCAAGAAGTCCGAGACCTTCTCCACCTACTCTGACAACCAGCCTGGTGTCCTTAT 201997 Query 350506 TCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTAC 350565 || || | || ||||| ||||| || || || || || || || || | || Sbjct 201996 CCAGGTCTACGAGGGTGAGCGTGCCCGTACCAAGGACAACAACCTGCTCGGCAAGTTCGA 201937 Query 350566 CCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATAT 350625 || | || || || || ||| | || ||||||||||| || ||| | |||||| | Sbjct 201936 ACTCACTGGCATCCCCCCTGCCCCTCGGGGTGTTCCTCAGATCGAGGTCACCTTCGATGT 201877 Query 350626 TGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 |||| | || |||||| | || || |||| || || || Sbjct 201876 TGATGCCAACGGTATTATCAACGTCTCCGCCGTCGAGAA 201838 >seq89 Length=200026 Score = 150 bits (166), Expect = 5e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || ||||| || |||||| || || || || ||||| Sbjct 22918 CCACCACGGAGCCGAAGGACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGAC 22977 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| ||||| || ||||| || || || ||||| |||||||| |||||| Sbjct 22978 AGAGTACGACCATCCTCAAGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGA 23037 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 |||||||| || ||||| || || | || || |||||||| | ||| || | ||| || Sbjct 23038 ATTCCTTCCTTGTCCTGGATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCTACC 23097 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| | |||||||| || || || || || || ||||||||| Sbjct 23098 TCGAGTGTGATGGTCTTTCCCGTAAGGGTCTTCACGAAGATCTGCATT 23145 Score = 107 bits (118), Expect = 6e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | ||||| | || |||||||| || || || ||||| || || Sbjct 23663 CATACCGCCACGCAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTC 23722 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || ||||||||||| | ||| |||||||| || Sbjct 23723 GGAGAGGGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGG 23782 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || || ||||| || | || || || || || | || || | || Sbjct 23783 AGGAATGCCTTCCTTGTCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTC 23842 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || | ||||| || || Sbjct 23843 AACCTCCAGAGTGATGGTCTTGCCAGT 23869 Score = 98.7 bits (108), Expect = 3e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | | || ||||| || || ||||| || ||||| || || || Sbjct 23370 CATACCACCACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 23429 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| ||||| | ||| ||||| || || Sbjct 23430 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGG 23489 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || |||||||| || || | || ||||| || || | || | || Sbjct 23490 GGGAATACCCTCCTTATCCTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTC 23549 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| || || || | ||||| || || || || || || Sbjct 23550 AACCTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTGAC 23588 >seq51 Length=40670 Score = 114 bits (126), Expect = 4e-20 Identities = 325/495 (66%), Gaps = 11/495 (2%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || || ||||| || || || || || || ||| || ||||| ||||| Sbjct 4652 GCCGTGATCACAGTACCCGCGTACTTCAACGACAATCAACGTCAAGCTACAAAGGATGCC 4593 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||||| || | ||||| || | || || || || || || || || || ||| Sbjct 4592 GGTGCTATTGCTGGCCTCAATGTCCTCCGGATCATCAACGAGCCTACAGCCGCTGCTATT 4533 Query 349730 GCATATGGGCTTGA---TAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 || || || |||| | || | |||| | || ||| | || |||| |||| | Sbjct 4532 GCCTACGGACTTGGGTCTGGAAAGGCTGACAAGGAGCGCAATGTCCTGATTTATGATCTT 4473 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACT-AACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 || ||||| ||||||||||| || || || |||| || ||| ||| |||| ||| || Sbjct 4472 GGAGGTGGAACTTTTGATGTTTCTCTTCTGAACA-TTCAAGGGGGCGTTTTCACAGTCAA 4414 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT---AATCGTCTCGTTTC 349902 || ||||| |||||||| || || || || | ||||||||| |||| |||| || Sbjct 4413 GGCTACTGCCGGTGATACTCACCTCGGAGGTCAGGATTTTGATACAAATCTCCTCGATT- 4355 Query 349903 GCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGC 349962 | || || || || || | | | | ||| || || | || ||||| Sbjct 4354 --ACTTCAAGAAGGAGTTCCAGAGAAAGAGTGGGAAGGATCTTTCAGGCGACCCCAGAGC 4297 Query 349963 AATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCA 350022 |||||||| | ||||| || ||||| || || || ||| | || || | |||| || Sbjct 4296 TCTGCGTCGCTTGAGAACGGCCTGTGAGCGGGCAAAACGTACTTTGTCCAATGCTACTCA 4237 Query 350023 AACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACG 350082 || | | || || || ||||| |||||| | || ||| | || ||||| || Sbjct 4236 GACTACAGTGGAGATCGACTCTCTCTTTGATGGAGAGGACTTCAACGCCTCCATTACTCG 4177 Query 350083 TGCTCGGTTTGAAGA 350097 |||||| ||||| || Sbjct 4176 TGCTCGTTTTGAGGA 4162 >seq265 Length=79167 Score = 111 bits (122), Expect = 5e-19 Identities = 118/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||||| | || || |||||| | || || ||| || || | ||||||||| || Sbjct 61382 ATTTCTTTGAGACGGGGAACACCAAGGGTGACGTTC---TTTGACGAAACACCAGCGAAA 61438 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||||||||||||||| | || |||| || || ||||| ||||| || |||| ||| Sbjct 61439 TGGAAAGTATTAAGAGTCATCTGCGTAGCCGGTTCGCCAATCGACTGAGCAGCAAGAACA 61498 Query 377566 CCAACCATTTCTCCAGGATTGACAATAGCCTCTT 377599 ||||||||||| || |||||| | |||| ||||| Sbjct 61499 CCAACCATTTCACCTGGATTGGCGATAG-CTCTT 61531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515248828125461