Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq219 127 2e-24 seq117 93.3 5e-14 >seq219 Length=270999 Score = 127 bits (140), Expect = 2e-24 Identities = 388/597 (65%), Gaps = 2/597 (0%) Strand=Plus/Minus Query 79306 TCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCG 79365 || ||||||||||| | |||||| || ||| | |||||| | || |||||| || Sbjct 154177 TCACCATAGACATCAGCCAGGCCAGGTGCCTCATTCGGGCAGAAAAGTGTCCAGTCACCG 154118 Query 79366 TCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGG 79425 | ||||||| || ||| || || || ||| |||| || || ||| ||||| || Sbjct 154117 TTAGCCTCAACCCGCTTCATAAACAGATCTGGGGTCCAAAGAGCGTAGAAAAGGTCACGA 154058 Query 79426 CAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCG 79485 | | |||||| | || ||||| || || || | || || | | || ||| Sbjct 154057 GCTCTGACCTCCTCCTTTCCATGGTTTTTGCGGAGATCCAAGAATTCGAAAACATCAGCG 153998 Query 79486 TGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACG 79545 ||||| || ||||| ||||| || || | |||| |||||| || ||||| | ||| Sbjct 153997 TGCCAAGGTTCCAGGTAGATAGCAAAAGCACCCGGCCGCTTGTTTCCACCCTGATCCACG 153938 Query 79546 TACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTC 79605 || | || || |||||||| || |||||||| || ||||| || | | |||||| Sbjct 153937 TATCTCGCAGTATTGTTGAATACACGGAGCATAGGGACGATTCCATTAGAAGAGCCGTTG 153878 Query 79606 GTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCC 79664 || ||| || | || | || || || | | | | || || || || || || Sbjct 153877 GTTCCGGCAATGTAAGAGCCCGTGGCACGGAT-TCGGTGGACGTTGAGACCAATACCGCC 153819 Query 79665 GGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTC 79724 | |||||| || |||||| ||| | || || ||||| || ||||| || Sbjct 153818 TGCAGTCTTGGAAATCATCGCGCAGGTCTTCAAGGTATCATAGATACCTTCGATGCTATC 153759 Query 79725 GTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAA 79784 | ||||| |||||||||| || | || ||| | | | || ||||| ||||| Sbjct 153758 TGCTCTCATATCGACCAGGAAACATGAGGCCAGCTGAGCCTGGGGAGTGCCGGCATTGAA 153699 Query 79785 GAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGAC 79844 || ||||||| || || || ||| |||| || ||||| | || ||||| || | Sbjct 153698 CAGAGTCGGCGAGGCATGGGTAAAGTACTTCTGAGACATCAAGTTATATGTCTCAATGGC 153639 Query 79845 GCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG 79901 | | |||| |||||| || || || || || ||||| | | || |||||| Sbjct 153638 CCTTTCAATATCGTTGCCGTGTATTCCAACAGCAACCCGCATCAGCATGTGCTGGGG 153582 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 ||||| | |||||||||||| ||||| | ||| ||||||| || | |||||| || Sbjct 155363 GTTCGGAGATAGTACATGCCAGTCTTCAATCCCATCTTCCACCCAGCAAAGTGCATGCTG 155304 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| | || | || |||| ||| ||||||||||| |||||||| ||| Sbjct 155303 GTAATCTTGCCCATGGTAGGCTCCTTCATGTGGATATTGAGCGACTGAGACTGGTCAATG 155244 Query 78310 TACGCACCGCGGTCGGCCGCCAT 78332 || ||||| ||||| || ||||| Sbjct 155243 TATGCACCACGGTCTGCAGCCAT 155221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20619 TCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGG 20678 |||||| | | |||| ||| || ||||| ||| | ||| | |||| | | ||||| | Sbjct 155168 TCAAGGCCCTCTACAAGACTGTCTGGGAGATCTCTCAGCGTAACATCCTGCAGATGGCTG 155227 Query 20679 CCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGA 20738 | || || || || ||||| |||||||| |||||||||||| || |||| || | || | Sbjct 155228 CAGACCGTGGTGCATACATTGACCAGTCTCAGTCGCTCAATATCCACATGAAGGAGCCTA 155287 Query 20739 GCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCA 20798 | ||| ||| | | | |||||| | || ||| | | ||| | ||||| |||| Sbjct 155288 CCATGGGCAAGATTACCAGCATGCACTTTGCTGGGTGGAAGATGGGATTGAAGACTGGCA 155347 Query 20799 TGTACTATCTGCGGACC 20815 |||||||||| || ||| Sbjct 155348 TGTACTATCTCCGAACC 155364 >seq117 Length=965375 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || ||||| |||||||||||||| || || | || |||||| | || ||||||||| Sbjct 188328 GTTGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATCTTCTGGTTGAAGAAGCGTGGC 188269 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | ||||| || || | ||||||||||||||||||||| || || || || || || Sbjct 188268 TTGATGCCTGGTCTTACTTTCTCCAACGAGCTGATTTCTCGCGATGAAGGTCTTCA 188213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522832167280