Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq219 136 4e-27 seq117 100 3e-16 >seq219 Length=270999 Score = 136 bits (150), Expect = 4e-27 Identities = 364/550 (66%), Gaps = 10/550 (2%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| || |||| ||| || ||||||||||| || ||| |||| || |||||||| Sbjct 153644 TGAGACATATAACTTGATGTCTCAGAAGTACTTTACCCATGCCTCGCCGACTCTGTTCAA 153703 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || || ||||| || | || |||||||| | |||| | || Sbjct 153704 TGCCGGCACTCCCCAGGCTCAGCTGGCCTCATGTTTCCTGGTCGATATGAGAGCAGATAG 153763 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| || ||||| || || | ||| || || || |||||| | || || Sbjct 153764 CATCGAAGGTATCTATGATACCTTGAAGACCTGCGCGATGATTTCCAAGACTGCAGGCGG 153823 Query 53422 TATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 ||| ||| || || | |||| ||||||| | ||| | || || || ||| Sbjct 153824 TATTGGTCTCAACGTCCACCGAA--TCCGTGCCACGGGCTCTTACATTGCCGGAACCAAC 153881 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 ||| | |||||||||| ||||||||||| || |||||||| || || | ||||| Sbjct 153882 GGCTCTTCTAATGGAATCGTCCCTATGCTCCGTGTATTCAACAATACTGCGAGATACGTG 153941 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 | |||||||| ||||| ||| | || || |||||||| || || |||||||| Sbjct 153942 GATCAGGGTGGAAACAAGCGGCCGGGTGCTTTTGCTATCTACCTGGAACCTTGGCACGCT 154001 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCC 53657 || || | || || | || || || || || || | || ||| | | ||| | Sbjct 154002 GATGTTTTCGAATTCTTGGATCTCCGCAAAAACCATGGAAAGGAGGAGGTCAGAGCT--C 154059 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 ||||||| || ||| ||||| |||| || || || || ||| | ||| ||| || Sbjct 154060 GTGACCTTTTCTAC-GCTCTTTGGACCCCAGATCTGTTTATGAAGCGGGTTGAGGCTAAC 154118 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776 | || ||| || | |||||||| ||| || ||||| | |||||| ||||| Sbjct 154119 GGTGACTGGACACTTTTCTGCCCGAATGAGGCACCTGGCCTGGCTGATGTCTATGGTGAC 154178 Query 53777 GAGTTTAACG 53786 |||||| ||| Sbjct 154179 GAGTTTGACG 154188 Score = 102 bits (112), Expect = 9e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||| || |||||||| ||||| |||||||| ||||| || || ||| |||| || | || Sbjct 155226 TGCAGACCGTGGTGCATACATTGACCAGTCTCAGTCGCTCAATATCCACATGAAGGAGCC 155285 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | | ||| |||| | | | ||||||||| |||||||||| |||| | ||||| || Sbjct 155286 TACCATGGGCAAGATTACCAGCATGCACTTTGCTGGGTGGAAGATGGGATTGAAGACTGG 155345 Query 55906 TATGTACTATCTGCGGACC 55924 ||||||||||| || ||| Sbjct 155346 CATGTACTATCTCCGAACC 155364 >seq117 Length=965375 Score = 100 bits (110), Expect = 3e-16 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || || || || | ||| |||||||| | ||||||||||||||||| |||||| Sbjct 188234 ATCAGCTCGTTGGAGAAAGTAAGACCAGGCATCAAGCCACGCTTCTTCAACCAGAAGATG 188293 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||||| ||| ||||||||||||||| ||| || ||||||||||| || || Sbjct 188294 GATGCAAAGGATCCAGAGAAGAAGATGCCTTCAACAGCGGCGAAGGCGACAAGACGCTGA 188353 Query 74904 GCGAACGGTG 74913 ||||| |||| Sbjct 188354 GCGAA-GGTG 188362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214036862600