Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq89 172 6e-38 seq91 140 4e-28 seq117 123 3e-23 seq219 111 2e-19 seq238 102 9e-17 seq221 86.0 7e-12 >seq89 Length=200026 Score = 172 bits (190), Expect = 6e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || ||||||||||| || || ||||||||||| | || | || | Sbjct 23588 GTCAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTTGAGTCTAGCGACACTATCGAC 23529 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || ||||| |||||||| ||||| || |||||||||||| | || Sbjct 23528 AATGTCAAGACAAAGATCCAGGATAAGGAGGGTATTCCCCCGGACCAGCAGCGTTTGATC 23469 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||||||||| || ||||| | || ||||| | ||||| || | || ||||| Sbjct 23468 TTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAG 23409 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || ||||| |||||||||||||| ||||| Sbjct 23408 TCCACCCTCCATCTCGTCTTGCGTCTTCGTGGTGG 23374 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| ||||| || |||||||| || || || || || || Sbjct 23372 ATGCAGATCTTTGTGAAGACCCTTACGGGAAAGACTATCACACTCGAAGTCGAATCCTCC 23313 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||| || |||||||||||||| || |||||| Sbjct 23312 GACACCATCGACAACGTTAAGACAAAGATTCAAGATAAGGAGGGAATTCCCCCTGACCAG 23253 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || || ||||| ||||| || ||||||| |||||||| | ||||| ||| Sbjct 23252 CAACGCCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTGTCTGACTACAAT 23193 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||||| || ||||| || || | || ||||| |||||| Sbjct 23192 ATCCAAAAGGAATCTACCCTTCACCTTGTTCTCCGACTTCGTGGTGGA 23145 Score = 165 bits (182), Expect = 9e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| ||||| || ||||| || || || ||||| || || Sbjct 23145 AATGCAGATCTTCGTGAAGACCCTTACGGGAAAGACCATCACACTCGAGGTAGAATCTTC 23086 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| || ||||| | || || ||||||||||| |||||||||||||| || Sbjct 23085 CGATACTATTGATAACGTGAAGACAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCA 23026 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||| || || ||||| || ||||||| |||||| || | ||||| || Sbjct 23025 GCAGCGTCTCATTTTCGCGGGAAAGCAGCTTGAGGATGGTCGTACTCTGTCTGACTACAA 22966 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || || ||| ||||| || ||| | || || || |||||| Sbjct 22965 CATCCAGAAAGAGAGCACCCTTCACCTCGTCCTTCGGCTCCGTGGTGGA 22917 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || ||||| ||||||||||| || | ||| | || | ||| | Sbjct 23869 ACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCCGACACCATCGACAACGTTAAGACA 23810 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| |||||||| || |||||||| || ||||||||| | || |||||||| ||| Sbjct 23809 AAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAGCAGCGTTTGATCTTTGCTGGCAAG 23750 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | ||||||||| | ||||| ||| |||| |||||||| ||||| || Sbjct 23749 CAGCTGGAGGACGGTCGTACCCTCTCCGACTACAATATCCAGAAGGAATCTACTCTCCAC 23690 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | ||||| || || || Sbjct 23689 TTGGTTCTCCGTCTGCGTGGCGG 23667 >seq91 Length=644249 Score = 140 bits (154), Expect = 4e-28 Identities = 144/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || || ||||||||||| || || || ||||| | || | ||| Sbjct 240078 CTTCGTGAAGACCCTGACGGGTAAGACTATTACCCTCGACGTCGAGTCGAGCGACACCAT 240137 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | || | ||| | || || |||||||||||||| || || || |||||||||||||| Sbjct 240138 CGACAACGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCT 240197 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAA 27592 || |||||||||||||| |||||||||| ||||| || ||| ||||| || |||| | Sbjct 240198 TATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACTCTGAGC-GACTACAACATCCAGA 240256 Query 27593 AGGAAT 27598 ||| || Sbjct 240257 AGGTAT 240262 >seq117 Length=965375 Score = 123 bits (136), Expect = 3e-23 Identities = 331/501 (66%), Gaps = 9/501 (2%) Strand=Plus/Minus Query 64660 ACTAAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAG 64716 || || |||||| | |||||||| || ||||| | | |||| ||| | || | |||| Sbjct 188409 ACGAAGAAGGCTCATTGGGCCATTCGCTGGATCCAGGACCGTGAGTCCACCTTCGCTCAG 188350 Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776 ||||| | || || ||| ||| ||||| || ||||| ||||| || || || || Sbjct 188349 CGTCTTGTCGCCTTCGCCGCTGTTGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATC 188290 Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836 |||||| | || ||||| ||| ||||||| ||||| | || || ||||||||||| ||| Sbjct 188289 TTCTGGTTGAAGAAGCGTGGCTTGATGCCTGGTCTTACTTTCTCCAACGAGCTGATTTCT 188230 Query 64837 CGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCAAGGA-C 64893 || || || || || ||| || || || || || ||||| || ||||| | | Sbjct 188229 CGCGATGAAGGTCTTCACACGGACTT--CGCTTGCCTGTTGTTCTCTCATCTCAACAACC 188172 Query 64894 AAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAA 64953 ||| || | | | | || || | | ||||| | |||||| |||||| Sbjct 188171 GCCCCAGCA-AGCAGGTTGTGCAGGACATCATCACTGAAGCTGTCGCAATTGAGAAGGAA 188113 Query 64954 TTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAG 65013 ||| | || | || || || | || |||||||| || || || ||| ||| Sbjct 188112 TTCCTAACGGATGCCCTCCCAGTTGCCCTTCTCGGCATGAATTCCAATCTTATGTGCCAG 188053 Query 65014 TATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTATTAAGCCCTACTGGAAT 65073 |||||||| ||||| || ||| | || || | | |||| | | |||| || Sbjct 188052 TATATCGAGTTTGTTGCTGATAGACTCCTGGTTGCGCTTGGCAACAGCAAGTACTACAAC 187993 Query 65074 TCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTT 65133 || | || ||||| |||| ||||| | ||| ||||| || || || ||||| || Sbjct 187992 TCCACCAACCCATTCGACTTCATGGACAACATCTCCCTGGCTGGTAAAACCAACTTCTTC 187933 Query 65134 GAAAAGAGGGTAGGTGATTAC 65154 || ||| | || || || ||| Sbjct 187932 GAGAAGCGCGTTGGCGACTAC 187912 >seq219 Length=270999 Score = 111 bits (122), Expect = 2e-19 Identities = 252/375 (67%), Gaps = 8/375 (2%) Strand=Plus/Minus Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 |||||||| | ||||| | ||||| ||| |||||||| | |||||||| ||| ||| Sbjct 153952 CCACCCTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGCATAGGGACGATTCCA 153893 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGA--TTG 81496 | || ||||| || || | || || ||| |||| || | | || ||| Sbjct 153892 TTAGAAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGGATTCGGTGGACGTTG 153833 Query 81497 AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556 | |||| || || |||| ||| |||||| || || |||| ||| ||||| | Sbjct 153832 A--GACCAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGGTCTTCAAGGTATCATAGA 153775 Query 81557 TTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTT 81616 | || |||||||||||| | |||| || | || |||||| | || ||||| | | Sbjct 153774 TACCTTCGATGCTATCTGCTCTCATATCGACCAGGAAACATGAGGCCAGCTGAG--CCTG 153717 Query 81617 TTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAG 81674 ||| |||||||||||||| || || | || || | || || | ||||||| Sbjct 153716 GGGAGTGCCGGCATTGAACAGAGTCGGCGAGGCATGGGTAAAGTACTTCTGAGACATCAA 153657 Query 81675 GTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCAT 81734 || ||| || || || | | | |||||||| ||||| || || | ||| || ||||| Sbjct 153656 GTTATATGTCTCAATGGCCCTTTCAATATCGTTGCCGTGTATTCCAACAGCAACCCGCAT 153597 Query 81735 AAACATGTACTGGGG 81749 | ||||| |||||| Sbjct 153596 CAGCATGTGCTGGGG 153582 >seq238 Length=427615 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || ||||| ||||||||||| || || || || || ||||| |||||| Sbjct 49971 GACAAGGAGGGCATCCCTCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAG 50030 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || ||||| | ||||| || |||| ||||| || ||||| || || || | Sbjct 50031 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACTCTGCACCTCGTGCTC 50090 Query 27619 CGTCTTCGCGGTGG 27632 ||||| || ||||| Sbjct 50091 CGTCTGCGTGGTGG 50104 >seq221 Length=103995 Score = 86.0 bits (94), Expect = 7e-12 Identities = 225/337 (67%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 31207 CCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATT 31266 || ||||| ||| || ||| ||| || ||| | || || | ||||| || ||| Sbjct 59160 CCCAAGCTGACCGATGCAAACAAGGCAGGAACCAAGGAGGGACATCACTGCACACTGATT 59219 Query 31267 ATTACCGAGGGTGACTCGGCAAAGGCGCTTG-CTATTGCTGGCTTGAGT-GTTGTGGGGC 31324 ||||||| ||||| || || || | ||||| | || || || ||| ||||| || | Sbjct 59220 CTTACCGAAGGTGATTCAGCTAAAG-GCTTGGCCATGGCAGGAC-GAGCAGTTGTCGGAC 59277 Query 31325 GCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCG 31384 || ||| || || || || || ||||| |||| | || || ||||| ||||| Sbjct 59278 CGGATCTGTTTGGTGTCTTCCCCCTGCGAGGAAAGCTTCTCAATGTCCGTGATGCCTCGT 59337 Query 31385 TTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGC 31444 || ||||| | || | ||| ||||| | || | || || | || || ||||| | Sbjct 59338 TTCAACAGATATCGCAAAATCAAGAGATCCAGAATATCAAGAACTTTCTTGGTCTTCAAC 59397 Query 31445 ATGGCAAGGTATATA---ATTCACTGAGAGAATTGCGGTACGGTCGCCTCATGATTATGA 31501 || |||| ||||| || | | | | | || || |||| | | |||||||||| Sbjct 59398 ATAAGAAGGAATATACCGATACGC---GCGGCCTCCGATATGGTCACTTGATGATTATGA 59454 Query 31502 CCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCT 31538 |||| |||| ||| || |||||||| |||||||| Sbjct 59455 CCGATCAGGATCACGATGGAAGTCACATTAAGGGTCT 59491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308354011440