Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq89 203 8e-47 seq91 113 1e-19 seq238 102 2e-16 seq219 84.2 5e-11 >seq89 Length=200026 Score = 203 bits (224), Expect = 8e-47 Identities = 178/222 (80%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || ||||||||||| || || || |||||||| || || || | ||||| Sbjct 23151 ACGAAGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGACAGGGT 23210 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || ||||||||||||||||| |||||||| |||| ||| Sbjct 23211 ACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCC 23270 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || || |||||| || ||||| ||||||||||| ||| ||| || ||||| Sbjct 23271 CTCCTTATCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGATTCGACTTCGAG 23330 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||||||||| || ||||| ||||| | |||||| Sbjct 23331 TGTGATAGTCTTTCCCGTAAGGGTCTTCACAAAGATCTGCAT 23372 Score = 178 bits (196), Expect = 3e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| ||| |||||| |||||||| || || | || || | ||||| Sbjct 22933 AGGACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCC 22992 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || || || || || || ||||||| ||||||||||||| Sbjct 22993 TCAAGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCC 23052 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| |||||||| || || || || || ||| |||||||| ||||| ||| Sbjct 23053 TGGATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTC 23112 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || ||||| || || | ||||||| Sbjct 23113 TTTCCCGTAAGGGTCTTCACGAAGATCTGCATT 23145 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| || || || ||||| || || || | ||||| | || || Sbjct 23682 AGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCGTCC 23741 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | || || || || ||||||| ||||||||||| Sbjct 23742 TCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCT 23801 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || ||||| ||||||||||| ||| |||||||| |||||||| ||| Sbjct 23802 TGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGATGGTC 23861 Query 211083 TTTCCCGT 211090 || || || Sbjct 23862 TTGCCAGT 23869 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | ||| || || || |||||||| || || ||||| || || | ||||| Sbjct 23379 ACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGT 23438 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || |||||||| || |||||||| | || || ||||| || |||| || Sbjct 23439 GCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACC 23498 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTC 211069 ||||| |||||||||||| || || || ||||| ||||| ||| |||||||| Sbjct 23499 CTCCTTATCCTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGA---CTCAACCTC 23555 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||| ||||| ||||| || ||||| ||||| || Sbjct 23556 GAGGGTGATAGTCTTGCCAGTGAGGGTCTTGAC 23588 >seq91 Length=644249 Score = 113 bits (124), Expect = 1e-19 Identities = 135/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || || || | ||||| || |||||||| || || |||||| Sbjct 240257 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATA 240198 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || ||||| || || | || |||||||||||||||||| || ||||| ||| Sbjct 240197 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCG 240138 Query 211047 ATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 |||||||| ||| || || ||||| || || ||||| ||||| || ||||| || Sbjct 240137 ATGGTGTC---GCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACG 240081 Query 211104 AA 211105 || Sbjct 240080 AA 240079 >seq238 Length=427615 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||||| || |||||||| || || | |||||| | || || Sbjct 50089 AGCACGAGGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCC 50030 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| ||||| || ||||| ||||| | || |||||||| Sbjct 50029 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 49971 >seq219 Length=270999 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 178230 ACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCAT 178289 |||||| |||||| | || || || |||||||||||| | || || || ||||||| Sbjct 154203 ACTTTTCGTAGAGAGCGTCAAACTCGTCACCATAGACATCAGCCAGGCCAGGTGCCTCAT 154144 Query 178290 TGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGG 178349 | |||||||| || |||| | ||||| ||| || || ||||| || || || | || Sbjct 154143 TCGGGCAGAAAAGTGTCCAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGG 154084 Query 178350 TCCAGATGGCATAGAAAATCTCTCTGGCTCT 178380 |||| | || ||||||| || | ||||| Sbjct 154083 TCCAAAGAGCGTAGAAAAGGTCACGAGCTCT 154053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147737580755