Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq89 163 7e-35 seq235 122 2e-22 seq91 107 5e-18 >seq89 Length=200026 Score = 163 bits (180), Expect = 7e-35 Identities = 155/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || |||||||| || || ||||| ||||||| |||||| || | || || Sbjct 23151 ACGAAGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGACAGGGT 23210 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| |||||||||||||| ||||| ||||| || ||||| || Sbjct 23211 ACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCC 23270 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| |||||| ||| || ||||||||||| |||| ||| || || | Sbjct 23271 CTCCTTATCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGATTCGACTTCGAG 23330 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 23331 TGTGATAGTCTTTCCCGT 23348 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||| ||||| || |||| |||||| |||| | || | || || Sbjct 23682 AGAACCAAGTGGAGAGTAGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGACCGTCC 23741 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| | || || || ||||| ||||| |||||||||||| Sbjct 23742 TCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCCTTGTCT 23801 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| || ||||||||||| |||| || || || | ||||| ||| Sbjct 23802 TGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGAGTGATGGTC 23861 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 23862 TTGCCAGTCA 23871 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||| ||||| |||| ||||| || | || ||| | ||||| Sbjct 22933 AGGACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCC 22992 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || || || || ||||| ||||||||||| Sbjct 22993 TCAAGCTGCTTTCCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCC 23052 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| |||||| || || || || || | ||| || || | ||||| ||| Sbjct 23053 TGGATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGGTC 23112 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| | || || | ||| | |||||| Sbjct 23113 TTTCCCGTAAGGGTCTTCACGAAGATCTGCATT 23145 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||| || ||||| ||||| || || || | ||||| |||| || || Sbjct 23379 ACGAAGACGCAAGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGT 23438 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| | || || ||||| || |||||||| Sbjct 23439 GCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACC 23498 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || ||||||||| ||| ||| ||||| ||||| | || || || | Sbjct 23499 CTCCTTATCCTGGATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCAACCTCGAG 23558 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 23559 GGTGATAGTCTTGCCAGT 23576 >seq235 Length=29381 Score = 122 bits (134), Expect = 2e-22 Identities = 191/270 (71%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 |||| ||||| |||| ||||| ||| | |||||||| ||||||| | |||||| Sbjct 25453 TATACTTAATGTTTGCATTATTTTCAGGTTTAATAGGTACAGCATTTTCTGTACTTATAA 25512 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTACAAC 7563 | ||||||||| ||| || ||| ||| |||||| | |||| ||| | || || Sbjct 25513 GATTAGAATTATCTGGACCAGGTGTACAATATATTGCA-GATAAT---CAATTATATAAT 25568 Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623 ||| ||||| || || || || | ||||||||||| | |||||||| | | | ||| Sbjct 25569 AGTATAATTACAGCTCACGCTATTTTAATGATTTTCTTCATGGTTATGCCTGCTTTAATA 25628 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || || || || |||| || | ||| || | || || | ||||||||||| || || Sbjct 25629 GGTGGGTTTGGTAATTTCTTATTACCTATATTAATAGGAGGACCTGATATGGCATTCCCT 25688 Query 7684 AGGCTTAACAATATAAGTTTTTGATTACTA 7713 || | || ||||| ||||| |||||| || Sbjct 25689 AGATTAAATAATATTAGTTTCTGATTATTA 25718 >seq91 Length=644249 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| ||| || ||| | ||||| || |||||||| ||||| |||||| Sbjct 240257 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATA 240198 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || || || || |||||||| ||||||||| ||| || ||| Sbjct 240197 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCG 240138 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| | || ||||| | || || ||||| ||||||| || || | ||| Sbjct 240137 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACGAA 240079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526814839178