Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq114 82.4 6e-11 >seq114 Length=402525 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 53479 TGACGGCAAGAAGCTCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGA 53538 ||||| | |||| |||||||||| || ||||||| | | | ||| |||| || || Sbjct 166156 TGACGACCTGAAGTTCGTCAAGGTCCGGATGAGGACTACGAAGATTCCACAGATTGGTGA 166215 Query 53539 CAAGTTTGCATCCT-TCACGGCGCAAAAGGGGAC-ATGCGGAGCG-GTCCTGACTCAGGA 53595 |||||| || ||| |||||| ||| ||||| || || | | | || | | | |||| Sbjct 166216 CAAGTTCGCTTCCCGTCACGG-GCAGAAGGGTACTATTGGTATCACGTACCGGC--AGGA 166272 Query 53596 GGACATGCCCTTCGACAAGGACGGGG-TGGTGCCCGACCTCATCATCAACCCCCACGCCT 53654 ||| |||||||| ||| || ||| || |||||| | ||||||||||| |||||| Sbjct 166273 GGATATGCCCTTT-ACACGGGAGGGTCTGACTCCCGACTTGATCATCAACCCACACGCCA 166331 Query 53655 TTCCCTCCAGGATGAC 53670 |||| || | ||||| Sbjct 166332 TTCCGTCACGTATGAC 166347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406161779317282