Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq114 93.3 3e-14 >seq114 Length=402525 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 48495 TGACGGCAAGAAGCTCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGA 48554 ||||| | |||| |||||||||| || ||||||| | | | ||| |||| ||||| Sbjct 166156 TGACGACCTGAAGTTCGTCAAGGTCCGGATGAGGACTACGAAGATTCCACAGATTGGTGA 166215 Query 48555 CAAGTTTGCGTCCT-TCACGGCGCAAAAGGGGACATGTGG-AGC-CGTCCTGACCCAGGA 48611 |||||| || ||| |||||| ||| ||||| || ||| | | ||| | | | |||| Sbjct 166216 CAAGTTCGCTTCCCGTCACGG-GCAGAAGGGTACTATTGGTATCACGTACCGGC--AGGA 166272 Query 48612 GGACATGCCCTTCGACAAGGACGGGG-TGGTGCCCGACCTCATCATCAACCCCCACGCCT 48670 ||| |||||||| ||| || ||| || |||||| | ||||||||||| |||||| Sbjct 166273 GGATATGCCCTTT-ACACGGGAGGGTCTGACTCCCGACTTGATCATCAACCCACACGCCA 166331 Query 48671 TTCCCTCCAGGATGACC 48687 |||| || | |||||| Sbjct 166332 TTCCGTCACGTATGACC 166348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505907533097