Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq219 178 2e-39 seq117 93.3 6e-14 >seq219 Length=270999 Score = 178 bits (196), Expect = 2e-39 Identities = 589/909 (65%), Gaps = 14/909 (2%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| || || || | |||||| ||| ||||| ||||| ||||| | | || | Sbjct 154186 TCAAACTCGTCACCATAGACATCAGCCAGGCCAGGTGCCTCATTCGGGCAGAAAAGTGTC 154127 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 |||||||| | ||| ||| || |||||||| ||||| || |||| ||||| || Sbjct 154126 CAGTCACCGTTAGCCTCAACCCGCTTCATAAACAGATCTGGGGTCCAAAGAGCGTAGAAA 154067 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTA---AGATCGAGAAACTCC 78101 || || || | ||| || || ||||| || ||||| ||||| | || || Sbjct 154066 AGGTCACGAGCTCTGACCTCCTCCTTTCC---ATGGTTTTTGCGGAGATCCAAGAATTCG 154010 Query 78102 ATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCT 78161 | || ||||| ||||| ||||| || || || || | | | || || || || || || Sbjct 154009 AAAACATCAGCGTGCCAAGGTTCCAGGTAGATAGCAAAAGCACCCGGCCGCTTGTTTCCA 153950 Query 78162 CCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTA 78221 |||||||| | ||||| || || || || | || | | ||| || | || || ||| Sbjct 153949 CCCTGATCCACGTATCTCGCAGTATTGTTGAATACACGGAGCATAGGGACGATTCCATTA 153890 Query 78222 GATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATC 78281 || | || || ||||| | ||| ||| || | || || || | | | Sbjct 153889 GAAGAGCCGTTGGTTCCGGCAATGTAAGAGCCCGTGGCACGGATTCGGTGGACGTTGAGA 153830 Query 78282 CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCC 78341 || || || ||||| |||| || || | ||||| ||||| ||||| |||||||| Sbjct 153829 CCAATACCGCCTGCAGTCTTGGAAATCATCGCGCAGGTCTTCAAGGTATCATAGATACCT 153770 Query 78342 TCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 78401 || || || || | |||| | | || ||||| | || ||| || ||| Sbjct 153769 TCGATGCTATCTGCTCTCATATCGACCAGGAAACATGAGGCCAGCTGAGCCTGGGGAGTG 153710 Query 78402 CCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTAT 78461 || ||||| || | ||||| || ||||| ||||| | || | ||| | | || ||| Sbjct 153709 CCGGCATTGAACAGAGTCGGCGAGGCATGGGTAAAGTACTTCTGAGACATCAAGTTATAT 153650 Query 78462 GTTTCAATAGCTGATTCTATGTCCCATTGA--TGAATTCCTACCGCTACACGCATCAACA 78519 || ||||| || ||| || || ||| || ||||| || || || ||||||| || Sbjct 153649 GTCTCAATGGCCCTTTCAATATCG--TTGCCGTGTATTCCAACAGCAACCCGCATCAGCA 153592 Query 78520 TATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAG 78579 | ||||| || | || || ||| ||| || | || |||||| || | || Sbjct 153591 TGTGCTGGGGACGCTCTGCCACCTTCCCATTGATCCGTAGCAGGTATGAACGCTCAAGAG 153532 Query 78580 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTT 78639 | || ||||| || | ||||| ||| || | ||||| | || | || || || | Sbjct 153531 TCTTGAAACCGAAGAAATTGTAGTTAAAATCGCGATCGTACACGATTGCGGAGTTAAGCT 153472 Query 78640 TATCTTTGTATTTGGTAACAATATCC-ATGACAGTAGTT-GAAATAATAGGAGATCGTAC 78697 ||| | ||| |||| || || ||| | | || ||||| || || | | || Sbjct 153471 CATCGGCATGTTTCATAACTATTTCATATGTC--TCCTTAGAAATCATCGGTGCTGGTTT 153414 Query 78698 ACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttt 78757 | ||| || || || ||||||| | | | ||| || || | || | || || Sbjct 153413 ATTATTCTTTGGGTTGACATAGTAATAGAGGTCTGAGATGACTAGAGAGAACTGCTTCTT 153354 Query 78758 tGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATG 78817 |||| |||||| || || ||||||||||| | ||||| |||||||||||||| || || Sbjct 153353 GGTTTGCTTGTGAAGGTTGGATACAGCTATCCGAGCAGCAAGAATAGCATAATCTGGGTG 153294 Query 78818 TTGTGTAGT 78826 | |||||| Sbjct 153293 TGTTGTAGT 153285 >seq117 Length=965375 Score = 93.3 bits (102), Expect = 6e-14 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCA 48215 |||||||||||||| | | ||| | ||||| || || || ||||| ||||| | ||| Sbjct 188213 TGAAGACCTTCATCGCGAGAAATCAGCTCGTTGGAGAAAGTAAGACCAGGCATCAAGCCA 188272 Query 48216 CGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCC 48275 || || || | ||| || || | || || |||||||| ||||| |||||||| || || Sbjct 188273 CGCTTCTTCAACCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGATGCCTTCAACAGCG 188332 Query 48276 GCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC---GTTGTGTATCCACCGTTGTGCC 48332 || || ||| ||| | || || | ||| || || || ||||| || ||| Sbjct 188333 GCGAAGGCGACAAGACGCTGAGCGAAGGTGGACTCACGGTCCTGGATCCAGCGAATGGCC 188392 Query 48333 CAATCAGCCTTCTTC 48347 |||| |||||||||| Sbjct 188393 CAATGAGCCTTCTTC 188407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666307875680