Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq219 131 2e-25 seq117 87.8 3e-12 >seq219 Length=270999 Score = 131 bits (144), Expect = 2e-25 Identities = 694/1095 (63%), Gaps = 25/1095 (2%) Strand=Plus/Minus Query 75371 TCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTT 75430 |||| |||||| ||||| || | || |||| | || || ||||||||||| ||||| Sbjct 155399 TCCACCGTGAATTGAATCGGTGCAGAAGCTGCCATGGTTCGGAGATAGTACATGCCAGTC 155340 Query 75431 TTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCG 75490 || | |||| |||| || || |||||||| || | ||| | || || Sbjct 155339 TTCAATCCCATCTTCCACCCAGCAAAGTGCATGCTGGTAATCTTGCCCATGGTAGGCTCC 155280 Query 75491 GCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATT 75550 || || ||||| | ||||||| || || ||| | || || | || || ||||| Sbjct 155279 TTCATGTGGATATTGAGCGACTGAGACTGGTCAATGTATGCACCACGGTCTGCAGCCATC 155220 Query 75551 TTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCT 75610 | | ||| | |||| || ||||| | ||| ||| | | ||||| | | Sbjct 155219 TGCAGGATGTTACGCTGAGAGATCTCCCAGACAGTCTTGTAGAGGGCCTTGATGGCTGCG 155160 Query 75611 GGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCA 75667 |||| ||| | | || |||| || || || || | ||||| ||||| || | Sbjct 155159 GGAATATTGGGAATGTTCTGAACAGAACCACCCTCCGCAATAATGCGGTTCTTCATGTTG 155100 Query 75668 TCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAAT 75727 ||| ||| | ||| | | |||| || || || |||| ||| ||| Sbjct 155099 TCAGACCAGAGACCCAAGTCGACAAGGTCCTTAAGAAGCCATGGGTTGACAACTTGGAAT 155040 Query 75728 TCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTG 75787 ||||||| | |||| |||| |||||| || || || || || | | |||||| Sbjct 155039 TCTCCAGCAAGGACTCGGCGAGAGTAAATGTTCGAAGTGTACGGCTCGAAGCACTCATTG 154980 Query 75788 TTTCCCAAAATTTGAGCAGTTGAA-GCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 75846 || | ||| || || | || || ||||||||||| ||||||| ||||| || | Sbjct 154979 AAGCCAAGAATCTG-GCTGGTGCTTGCCGTCGGCATAGGGGCCACCAGCAAACTGTTGCG 154921 Query 75847 GAGACCATGTGTTCTG--ATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGT 75904 | || ||| |||| || || | || || | | ||||||||| || || | ||| Sbjct 154920 CACGCC--GTGCTCTGCAATCTTGGCCTTGAGCGAATCCCAATCCCAGAGGTCGGTGGGT 154863 Query 75905 ACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTATATGT 75963 ||||| | |||||||| || || || ||| || | || || | |||||| Sbjct 154862 TTCCTGTCCCACATGTCGTATTGGAGGATACC-TTGGGAGACGGGAGAGCCTTCATATGT 154804 Query 75964 TTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAAT 76023 || || ||||| || | || ||||| | ||| || ||||||| || || Sbjct 154803 CTCATACGTCCCAAACTCCTTGGCCAGTTCCGCAGACGCAGTCAAGGCACCGTGGTAGAT 154744 Query 76024 TGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTA-TCAAAAGGATAATGTA 76082 ||||||||||||| | || || | | |||||| | | | ||||| || | | Sbjct 154743 GGTTTCGAAAATCTGAATGTTCAGCTGTCTCGCTTCG-GCCGAGTCAAATGGCAGGCGCA 154685 Query 76083 AAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTAT 76142 | || || || || || || || | || |||| | |||| || | ||| | || Sbjct 154684 AGGCAAGGAAGGCGTCGGCAAGACCATTGACACCAAGAGCAATGGGACGATGGCGAAGAT 154625 Query 76143 TGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTC 76202 || | | ||||| |||| ||| || || ||||| || ||||| || || || || | Sbjct 154624 TGCTCTTCTTGGCTTCGGGAACAGGATAGTAGTTAATGTCAATAATCTTGTTCAGGTTCC 154565 Query 76203 TGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTA-----T 76257 ||||| || | || || || | || || |||||| ||| ||| | | Sbjct 154564 GGACAAGAACCTGCACAACTTCATGCAGCTTTCCAAAATCGTATTCACCACGGACAGAAT 154505 Query 76258 CA-CAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGG 76316 || ||||| || ||| || | |||||| | |||||||| || || || | | | | Sbjct 154504 CAACAAACGTAGGAAGGGCAAGAGATGCCAAGTTACAAACTGCAACTTCGTCCGGAGCGC 154445 Query 76317 CATATTGTATTATCTCCGTGCATAGATTA---CTACACTTGATAGTTCCAAGATTTTGTT 76373 || | | ||||| ||||| || || |||| ||||||||| || || | | Sbjct 154444 TGTACTCGACAATCTCAGTGCAGAGGTTGGAGCTACG---GATAGTTCCGAGGTTCTTCT 154388 Query 76374 GGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCT 76433 ||||||||||| |||| || | ||||||||| | | ||| || ||||||| || ||| Sbjct 154387 GGTTGCTCTTTCTGTTGCAAGCGTCCTTATACAACATAAAGGGGTTTCCAGTCTCTGTCT 154328 Query 76434 GTGATTCGATAATAG 76448 | | |||| ||||| Sbjct 154327 GCGCCTCGAGAATAG 154313 >seq117 Length=965375 Score = 87.8 bits (96), Expect = 3e-12 Identities = 182/265 (69%), Gaps = 7/265 (3%) Strand=Plus/Plus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 ||| | || || || ||||| || || ||||| || || || || || | |||||| Sbjct 188553 TACGTCTCAGAGTGGATGTTCTCGATCATGATCTGGAAACCATAGAAGCAACGCGCTTCA 188612 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAA-TTCTCATTCACTATTCCATCACT 47039 | |||||| ||||| || ||| ||||| |||| ||||||||||| || ||||| Sbjct 188613 GGAATCTGGACCTCGCCACTAAAACGTTCC-ACAAGGTTCTCATTCACGATCCCATCGGA 188671 Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATA---TTTTTCATCGGT-AGTCAGTT 47095 ||| || || || || | || || || || || | |||||| | || | | | Sbjct 188672 AGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAGTAACGCTCGTCATCGTTCAGGC-GAT 188730 Query 47096 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 | | |||||| | | ||||| || | || | ||| |||||||||||||| || |||| Sbjct 188731 TGTGCCAGTCGTGAAGGTCTTTGGACAAGTCGATTTCCTCAGCTGTCCAGAAGGAGGCCT 188790 Query 47156 CTGCTTTTTTATACATATTCCATAT 47180 | || || || ||||| | ||| || Sbjct 188791 CGGCCTTCTTGTACATTTGCCAGAT 188815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931842347840