Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq89 125 2e-23 seq219 91.5 3e-13 seq91 91.5 3e-13 >seq89 Length=200026 Score = 125 bits (138), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| ||||| ||||| ||||| || |||||||| ||||| || | | || | Sbjct 23155 AGTCGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATATTGTAGTCAGACAGGGTACGG 23214 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 ||||| || || ||||| || ||||||||||| | |||||||| | | ||||| | Sbjct 23215 CCATCCTCAAGCTGCTTT--CCAGCGAAGATAAGGCGTTGCTGGTCAGGGGGAATTCCCT 23272 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| |||||||| ||| || || | || | | |||| || || ||||| || | Sbjct 23273 CCTTATCTTGAATCTTTGTCTTAACGTTGTCGATGGTGTCGGAGGATTCGACTTCGAGTG 23332 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || ||||| || |||||||| |||| |||||| Sbjct 23333 TGATAGTCTTTCCCGTAAGGGTCTTCACAAAGATCTGCAT 23372 Score = 104 bits (114), Expect = 5e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || |||||| ||||||||||| || | | ||| | ||||| Sbjct 22933 AGGACGAGGTGAAGGGTGCTCTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCATCC 22992 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || ||||| || || | |||||| || | | ||||||||||| | Sbjct 22993 TCAAGCTGCTTT--CCCGCGAAAATGAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGT 23050 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || ||| || || | || | | || ||| ||||| || || || || | Sbjct 23051 CCTGGATCTTTGTCTTCACGTTATCAATAGTATCGGAAGATTCTACCTCGAGTGTGATGG 23110 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||| || ||||||||||||| ||||||| Sbjct 23111 TCTTTCCCGTAAGGGTCTTCACGAAGATCTGCATT 23145 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| || || ||||| || || |||||||| |||| | || | || || || Sbjct 23391 GACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTC 23450 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || || |||||||| | | ||||||||||| | || || ||||| || || Sbjct 23451 AAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTG 23510 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || ||| |||||| | || | |||| | ||| || || || || ||||| || Sbjct 23511 GATCTTTGTCTTGACATTGTCGATAGTGTCGCTAGACTCAACCTCGAGGGTGATAGTCTT 23570 Query 152075 GCCCGTGAGAGTCTTCACGA 152094 ||| ||||| ||||| |||| Sbjct 23571 GCCAGTGAGGGTCTTGACGA 23590 >seq219 Length=270999 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 115627 TTTTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGT 115686 ||||||| || ||||||| | ||||| ||||||||||| || |||| ||||| | Sbjct 154066 TTTTCTACGCTCTTTGGACCCCAGATCTGTTTATGAAGCGGGTTGAGGCTAACGGTGACT 154125 Query 115687 GGAGCCTCTTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTG 115746 ||| || || || || ||||| || ||||| || | |||||| |||||| ||||||| Sbjct 154126 GGACACTTTTCTGCCCGAATGAGGCACCTGGCCTGGCTGATGTCTATGGTGACGAGTTTG 154185 Query 115747 AGAATCTTTACGAAAGGT 115764 | ||| ||||||| || Sbjct 154186 ACGCTCTCTACGAAAAGT 154203 >seq91 Length=644249 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| ||| | ||| | ||||| || || || || || |||||| Sbjct 240257 TTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATA 240198 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||||| | ||| || ||||| || || || ||| ||||| | || Sbjct 240197 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCG 240138 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| ||| || || || |||||||| || ||||| || |||||||||||| Sbjct 240137 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATAGTCTTACCCGTCAGGGTCTTCACGAAG 240078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153816557184577